BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0150.0037.p (177 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 239 1e-64 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 102 1e-23 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 102 2e-23 gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [H... 100 1e-22 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 99 2e-22 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 239 bits (609), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/134 (88%), Positives = 123/134 (91%) Query: 1 VVLMSAKLAAELGLPVLAKIKSYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEI 60 VV+ SAKLAAELGLPVLAKIK+YSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEI Sbjct: 256 VVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEI 315 Query: 61 NEAFAAQAIAVNKQMGWDTSKINVNGGAIAIGHPIGASGCRVRARGGPRPAPRDAKRGLA 120 NEAFAAQAIAVNKQMGWDTSKINVNGGAIA+GHPIGASGCRV RDAK+GLA Sbjct: 316 NEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASGCRVLVTLLHEMVRRDAKKGLA 375 Query: 121 SLCIGGGMGVALAV 134 SLCIGGGMGVALAV Sbjct: 376 SLCIGGGMGVALAV 389 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 102 bits (255), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 83/132 (62%), Gaps = 2/132 (1%) Query: 1 VVLMSAKLAAELGLPVLAKIKSYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEI 60 ++++S K+ + L LA+ S++ G+ P IMG+GP A LK G T +D +E+ Sbjct: 262 LIIVSEKILKQFNLTPLARFVSFAVRGVPPEIMGIGPKEAIPAALKAGGLTQDQIDWIEL 321 Query: 61 NEAFAAQAIAVNKQMGWDTSKINVNGGAIAIGHPIGASGCRVRARGGPRPAPR-DAKRGL 119 NEAFAAQA+AV +G D SK+N GGAIA+GHP+GA+G +RA R + K G+ Sbjct: 322 NEAFAAQALAVIGDLGLDPSKVNPMGGAIALGHPLGATGA-IRAATTIHALRRKNLKYGM 380 Query: 120 ASLCIGGGMGVA 131 ++C+G GMG A Sbjct: 381 VTMCVGTGMGAA 392 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 86/136 (63%), Gaps = 2/136 (1%) Query: 1 VVLMSAKLAAELGLPVLAKIKSYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEI 60 ++L SA+ + L A+I ++AG+ P IMGMGP PAS+ L + G T +D++E+ Sbjct: 262 LLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIEL 321 Query: 61 NEAFAAQAIAVNKQMGW--DTSKINVNGGAIAIGHPIGASGCRVRARGGPRPAPRDAKRG 118 NEAFA+Q +AV +++G D +++N NGGAIA+GHP+G SG R+ + + Sbjct: 322 NEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYA 381 Query: 119 LASLCIGGGMGVALAV 134 L ++CIG G G+A+ + Sbjct: 382 LCTMCIGVGQGIAMVI 397 >gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 99.8 bits (247), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 67/102 (65%) Query: 31 SIMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIA 90 IMG+GPVPA + L++ G T D+ EINEA AQ +AV +++G D ++NVNGGAIA Sbjct: 307 EIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNVNGGAIA 366 Query: 91 IGHPIGASGCRVRARGGPRPAPRDAKRGLASLCIGGGMGVAL 132 +GHP+ A+G R+ R A+ +AS CIGGG G+AL Sbjct: 367 LGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIAL 408 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 99.0 bits (245), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 2/136 (1%) Query: 1 VVLMSAKLAAELGLPVLAKIKSYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEI 60 ++L S K A L A++ ++AG+ P IMG GP PA + L + G T +D++E+ Sbjct: 262 LLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAVRKVLAQVGLTLAQMDVIEL 321 Query: 61 NEAFAAQAIAVNKQMGW--DTSKINVNGGAIAIGHPIGASGCRVRARGGPRPAPRDAKRG 118 NEAFAAQ +AV + +G D + +N NGGAIAIGHP+GASG R+ + + Sbjct: 322 NEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGASGARLVTTAINQLERSGGRYA 381 Query: 119 LASLCIGGGMGVALAV 134 L ++CIG G G+AL + Sbjct: 382 LCTMCIGVGQGIALVI 397 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 296,014 Number of extensions: 8372 Number of successful extensions: 46 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 6 Length of query: 177 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 98 Effective length of database: 1,245,805 Effective search space: 122088890 Effective search space used: 122088890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)