BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0035.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309595|ref|YP_003773687.1| transcription regulator protein...   212   8e-57

>gi|300309595|ref|YP_003773687.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  212 bits (540), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 119/150 (79%), Gaps = 6/150 (4%)

Query: 2   PQYNAP--LQRLQGMFARWVKLVSVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRD 59
           P    P  L RL+ MFARWVK V+VEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRD
Sbjct: 88  PSIKEPRGLPRLEAMFARWVKQVTVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRD 147

Query: 60  ALHRCINQSMEMGHLRSDINVEQMVYEIYGLILALHHDARFLKIPGSVERAQAGFDRLID 119
           AL RCI Q+++ GHLR +++V QMVYE+YGLILALHHDARFL IPGSVERA+A F RLI 
Sbjct: 148 ALERCIQQAIDAGHLRPEVDVSQMVYEMYGLILALHHDARFLHIPGSVERAEASFRRLIG 207

Query: 120 SYRNPQVPQISASAKTASSKTTKPAANKAA 149
           SYR    PQ S S  +  +K +K AA KAA
Sbjct: 208 SYR----PQGSDSLSSTPAKHSKSAARKAA 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 414,494
Number of extensions: 14704
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)