BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0033.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase [Herbasp...   197   1e-52
gi|300310835|ref|YP_003774927.1| acyl-CoA dehydrogenase [Herbasp...    82   1e-17
gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbasp...    79   1e-16

>gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 596

 Score =  197 bits (502), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/108 (88%), Positives = 103/108 (95%)

Query: 1   MNAARLGVGMQGLGLTEVAYQNALVYAKDRIQMRSLSGVKAPDKAADPIIVHPDVRRMLL 60
           MNAARLGVGMQGLGLTEVAYQNALVYAKDR+QMRSLSG+KA DK ADPIIVHPDVRRMLL
Sbjct: 294 MNAARLGVGMQGLGLTEVAYQNALVYAKDRLQMRSLSGIKAADKPADPIIVHPDVRRMLL 353

Query: 61  TAKAYAEGGRAFCSYVALQLDKELNHPDEEVRKEAADQVALLTPVVKA 108
           TAKA+AEGGRAF SYVAL+LDKEL HPDE+VRK++AD VALLTPVVKA
Sbjct: 354 TAKAFAEGGRAFTSYVALELDKELTHPDEQVRKDSADIVALLTPVVKA 401


>gi|300310835|ref|YP_003774927.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 594

 Score = 82.0 bits (201), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 1   MNAARLGVGMQGLGLTEVAYQNALVYAKDRIQMRSLSGVKAPDKAADPIIVHPDVRRMLL 60
           MNAAR  VG+QGL ++E AYQ A+ YA+DRIQ R L+G   P      II  PDVRRML+
Sbjct: 293 MNAARFAVGIQGLSVSERAYQKAVAYARDRIQSRDLAGSPGPVA----IIHQPDVRRMLM 348

Query: 61  TAKAYAEGGRAFCSYVALQLDKELNHPDEEVRKEAADQVALLTPVVKA 108
           + +A  E  RA     A   D      DE  RK        L P+VK 
Sbjct: 349 SMRAQIEAARALSYVAAATSDAAHFSDDEATRKSNQAFYEYLVPIVKG 396


>gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 591

 Score = 78.6 bits (192), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 7/109 (6%)

Query: 1   MNAARLGVGMQGLGLTEVAYQNALVYAKDRIQMRSLSGVKAPDKAADPIIV-HPDVRRML 59
           MNAARL VG QGLGL E AYQ A  YA++R Q R      AP  + + +IV HP V+++L
Sbjct: 288 MNAARLHVGAQGLGLAEAAYQRASAYARERRQSR------APGSSGNDLIVHHPAVQKLL 341

Query: 60  LTAKAYAEGGRAFCSYVALQLDKELNHPDEEVRKEAADQVALLTPVVKA 108
           +  +   EG R    +  L LD   + P+  +R    +++  +TPV+KA
Sbjct: 342 MEQRCRIEGARLLTCWAGLLLDLAEHDPEAALRSRHHERLEFITPVIKA 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 326,585
Number of extensions: 11701
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)