BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0031.p
         (562 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase...  1013   0.0  
gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase...   110   3e-25

>gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 805

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/524 (92%), Positives = 507/524 (96%)

Query: 1   MGAQIAAHCINAKVPVVLFDLPAKEGPKNGIVLRAIENLKKLSPAPLGNKEDAALIQVAN 60
           MGAQIAAHCINA+VPVVLFDLPAKEGPKNGIV RAIENLKKLSPAPLGNK+DAALIQVAN
Sbjct: 27  MGAQIAAHCINARVPVVLFDLPAKEGPKNGIVQRAIENLKKLSPAPLGNKDDAALIQVAN 86

Query: 61  YEDDIELLKGCDLIIEAIAERMDWKHDLYKKVAPHIAPNAIFASNTSGLSITALSDGFDA 120
           YEDD+ +L+GCDLIIEAIAERMDWKHDLYKKVAPHI P AIFASNTSGLSI ALS+GFDA
Sbjct: 87  YEDDLAVLEGCDLIIEAIAERMDWKHDLYKKVAPHIGPKAIFASNTSGLSINALSEGFDA 146

Query: 121 ELKARFCGVHFFNPPRYMHLVELIPTATTNPEILNQLEAFLTTTLGKGVVRAFDTPNFVA 180
            LKARFCGVHFFNPPRYMHLVELIPT +T P IL+QLEAFLTTTLGKGVVRAFDTPNFVA
Sbjct: 147 GLKARFCGVHFFNPPRYMHLVELIPTQSTEPHILDQLEAFLTTTLGKGVVRAFDTPNFVA 206

Query: 181 NRVGVFGILATAIEAEKYGLSVDVVDDLTGAKLGRAKSGTFRTADVVGLDTMGHVIKTMQ 240
           NRVGVFGILAT IEAEKYGLSVDVVDDLTGAKLGRAKSGTFRTADVVGLDTMGHVI+TMQ
Sbjct: 207 NRVGVFGILATIIEAEKYGLSVDVVDDLTGAKLGRAKSGTFRTADVVGLDTMGHVIRTMQ 266

Query: 241 DNLKDDPFFSSYATPPLLAKLVEQGALGQKSGAGFYKKVGKDILRIDPAKGDYVPGGGKA 300
           DNLKDDPFFSSYATPPLLAKLVEQGALGQKSGAGFYKKVGKDILRIDPAKGDYVPGG KA
Sbjct: 267 DNLKDDPFFSSYATPPLLAKLVEQGALGQKSGAGFYKKVGKDILRIDPAKGDYVPGGAKA 326

Query: 301 DDIIARILKEKDPVKRMKALHDSTNPQGQFLWAIFRDAFHYIAVHLETVADNARDLDFAM 360
           DDIIARILKEKDPVKRMKALHDSTNPQGQFLWAIFRDAFHYIAVHLE+VADNARDLDFAM
Sbjct: 327 DDIIARILKEKDPVKRMKALHDSTNPQGQFLWAIFRDAFHYIAVHLESVADNARDLDFAM 386

Query: 361 RWGFGWTVGPFETWQASGWQQVATWIKEDIEAGKALSTAPLPAWVFDGRDGVHSAQGSYS 420
           RWGFGW+VGPFETWQA+GW+Q+A W+KEDI+AGKALSTAPLP WVFDGRDGVHS +GSYS
Sbjct: 387 RWGFGWSVGPFETWQAAGWKQIAQWVKEDIDAGKALSTAPLPDWVFDGRDGVHSEKGSYS 446

Query: 421 PSKKANVARSELPVYQRQAFRAPLVGEGAADGKTAGTTFFEDDSVRIWHQNDDVLILSFK 480
           PSKKA+VARSELPVYQRQAFRAPLVGEGAADGK+AGTTFFED+SVRIWHQNDDVLILSFK
Sbjct: 447 PSKKADVARSELPVYQRQAFRAPLVGEGAADGKSAGTTFFEDESVRIWHQNDDVLILSFK 506

Query: 481 TKMHVIGQGVIDGMNKAIDEAEKNFKGLVIWHADAAEGGAFSPG 524
           TKMHVIGQGVIDGMNKA+ EAE+NFKGLVIWH DAAEGGAFS G
Sbjct: 507 TKMHVIGQGVIDGMNKAVSEAEQNFKGLVIWHPDAAEGGAFSAG 550


>gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 136/284 (47%), Gaps = 22/284 (7%)

Query: 1   MGAQIAAHCINAKVPVVLFDLPAKEGPKNGIVLRAIENLKKLSPAPLGNKEDAALIQVAN 60
           MGA IA     A  PV+L+D  ++EG     +     NL KL      +K   AL Q A+
Sbjct: 24  MGAGIAQVAAVAGHPVLLYD--SREGAAGKAIGAICTNLDKLVSK---DKLTPALAQAAS 78

Query: 61  YE----DDIELLKGCDLIIEAIAERMDWKHDLYKKVAPHIAPNAIFASNTSGLSITALSD 116
                   +E L   DL+IEAI E++  KH+L+ K+   ++   I A+NTS LSIT ++ 
Sbjct: 79  QRISVAQSLEELHQADLVIEAIVEQLAAKHELFGKLEAIVSTRCILATNTSSLSITQIAA 138

Query: 117 GFDAELKARFCGVHFFNPPRYMHLVELIPTATTNPEILNQLEAFLTTTL--GKGVVRAFD 174
           G   +   R  G+HFFNP   M LVE+I    ++  +   L     T L  GK  V A  
Sbjct: 139 GL--QHPERVVGMHFFNPVPMMALVEIISGLASDAALAQCLH---DTALAWGKTPVMARS 193

Query: 175 TPNFVANRVGVFGILATAIEAEKYGLSVDVVDDLTGAKLGRAKSGTFRTADVVGLDTMGH 234
           TP F+ NR+      A  +     G +     D    + G  + G F   D++G D    
Sbjct: 194 TPGFIVNRLA-RPYYAEGLRMLHEGGAQPATIDAVMREAGGFRMGPFELMDLIGHDVNFA 252

Query: 235 VIKTMQDNLKDDPFFSSYATPPLLAK-LVEQGALGQKSGAGFYK 277
           V +++     +DP F    TP L+ + LV  G LG+KSG GFY+
Sbjct: 253 VTQSVFHAYFNDPRF----TPSLIQQELVHAGYLGRKSGRGFYR 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,921,998
Number of extensions: 86793
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 2
Length of query: 562
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 472
Effective length of database: 1,193,720
Effective search space: 563435840
Effective search space used: 563435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)