BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0150.0029.p (279 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 494 e-141 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 198 5e-52 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 179 2e-46 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 178 6e-46 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 129 3e-31 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 494 bits (1273), Expect = e-141, Method: Compositional matrix adjust. Identities = 241/279 (86%), Positives = 258/279 (92%), Gaps = 5/279 (1%) Query: 1 MSMVPMMGFHPSVNMGAFKDENIGMAYGMGLTAENVAKQWKVSREAQDAFALASHQKAIA 60 MSMVPMMGFHPS+N+ AFKDEN+GMAYGMGLTAE VA+QWKVSREAQD F+LASHQKAIA Sbjct: 125 MSMVPMMGFHPSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQDEFSLASHQKAIA 184 Query: 61 AQLAGEFNDETTSVDIIERFPNLATGQIDIKTRTVNKDEGARADSTIEALTKLKPVFAAK 120 AQ AGEF DE TS +I+ERFPNLATG+ID+KTRTV+ DEG RADS + AL KLKPVFAAK Sbjct: 185 AQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNLAALAKLKPVFAAK 244 Query: 121 GSVTAGNSSQTSDGAGEXWGGALILVSEKILKQFNLTPLARFASFAVRGVPPEIMGIGPK 180 GSVTAGNSSQTSDGAG ALI+VSEKILKQFNLTPLARF SFAVRGVPPEIMGIGPK Sbjct: 245 GSVTAGNSSQTSDGAG-----ALIIVSEKILKQFNLTPLARFVSFAVRGVPPEIMGIGPK 299 Query: 181 EAIPVALRAAGITQDQLDWIELNEAFAAQALAVIQDLGLDPAKVNPMGGAIALGHPLGAT 240 EAIP AL+A G+TQDQ+DWIELNEAFAAQALAVI DLGLDP+KVNPMGGAIALGHPLGAT Sbjct: 300 EAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIALGHPLGAT 359 Query: 241 GAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERM 279 GAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFER+ Sbjct: 360 GAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 198 bits (503), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 110/252 (43%), Positives = 157/252 (62%), Gaps = 15/252 (5%) Query: 27 YGMGLTAENVAKQWKVSREAQDAFALASHQKAIAAQLAGEFNDETTSVDIIERFPNLATG 86 Y MG+TAENVAK++++SRE QDAFA AS KA AAQ AG+F DE ++I + Sbjct: 155 YHMGITAENVAKKFEISREEQDAFAAASQNKAEAAQKAGKFKDEIVPIEIKGKK------ 208 Query: 87 QIDIKTRTVNKDEGARADSTIEALTKLKPVFAAKGSVTAGNSSQTSDGAGEXWGGALILV 146 +T + DE + T E+L L+P F G+VTAGN+S +DGA A+++ Sbjct: 209 ----ETVVFDTDEFVKHGVTAESLATLRPAFDKAGTVTAGNASGINDGAA-----AVVVT 259 Query: 147 SEKILKQFNLTPLARFASFAVRGVPPEIMGIGPKEAIPVALRAAGITQDQLDWIELNEAF 206 S K+ + L LA+ +++ G+ P IMG+GP A + L+ AG T LD +E+NEAF Sbjct: 260 SAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEINEAF 319 Query: 207 AAQALAVIQDLGLDPAKVNPMGGAIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCV 266 AAQA+AV + +G D +K+N GGAIALGHP+GA+G T +H + R++ K G+ ++C+ Sbjct: 320 AAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASGCRVLVTLLHEMVRRDAKKGLASLCI 379 Query: 267 GTGMGAAGIFER 278 G GMG A ER Sbjct: 380 GGGMGVALAVER 391 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 179 bits (454), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/250 (46%), Positives = 150/250 (60%), Gaps = 17/250 (6%) Query: 32 TAENVAKQWKVSREAQDAFALASHQKAIAAQLAGEFNDETTSVDIIERFPNLATGQIDIK 91 TAENVA +KVSR QD FA+ S KA AAQ G E V I ++ + Sbjct: 166 TAENVAVDFKVSRADQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGD--------- 216 Query: 92 TRTVNKDEGARADSTIEALTKLKPVFAAKGSVTAGNSSQTSDGAGEXWGGALILVSEKIL 151 TV +DE RA +++EAL +LK V GSVTAGN+S +DGA AL+L S + + Sbjct: 217 PITVTQDEHPRA-TSMEALARLKGVVKPDGSVTAGNASGVNDGAC-----ALLLASAEAV 270 Query: 152 KQFNLTPLARFASFAVRGVPPEIMGIGPKEAIPVALRAAGITQDQLDWIELNEAFAAQAL 211 +++ L P AR A GV P IMG+GP A L G+T DQ+D IELNEAFA+Q L Sbjct: 271 EKYQLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGL 330 Query: 212 AVIQDLGL--DPAKVNPMGGAIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTG 269 AV+++LG+ D A+VNP GGAIALGHPLG +GA T + L R +Y + TMC+G G Sbjct: 331 AVLRELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVG 390 Query: 270 MGAAGIFERM 279 G A + ER+ Sbjct: 391 QGIAMVIERV 400 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 178 bits (451), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 146/250 (58%), Gaps = 16/250 (6%) Query: 32 TAENVAKQWKVSREAQDAFALASHQKAIAAQLAGEFNDETTSVDIIERFPNLATGQIDIK 91 TAENVA ++++R QDAFAL S Q+ AAQ AG F E + I ++ + Sbjct: 165 TAENVATDFQINRADQDAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGD--------- 215 Query: 92 TRTVNKDEGARADSTIEALTKLKPVFAAKGSVTAGNSSQTSDGAGEXWGGALILVSEKIL 151 V DE R D+T+ L KLK V G+VTAGN+S +DGA AL+L S K Sbjct: 216 PLVVTTDEHPRPDTTLATLAKLKGVVRPDGTVTAGNASGVNDGAC-----ALLLASPKAA 270 Query: 152 KQFNLTPLARFASFAVRGVPPEIMGIGPKEAIPVALRAAGITQDQLDWIELNEAFAAQAL 211 + L P AR A GV P IMG GP A+ L G+T Q+D IELNEAFAAQ L Sbjct: 271 DLYRLKPRARVLGMATAGVAPRIMGFGPAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGL 330 Query: 212 AVIQDLGL--DPAKVNPMGGAIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTG 269 AV++DLGL D A VNP GGAIA+GHPLGA+GA T I+ L R +Y + TMC+G G Sbjct: 331 AVMRDLGLPDDAAHVNPNGGAIAIGHPLGASGARLVTTAINQLERSGGRYALCTMCIGVG 390 Query: 270 MGAAGIFERM 279 G A + ER+ Sbjct: 391 QGIALVIERV 400 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 129 bits (324), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/253 (35%), Positives = 130/253 (51%), Gaps = 18/253 (7%) Query: 17 AFKDENIGMAYGMGLTAENVAKQWKVSREAQDAFALASHQKAIAAQLAGEFNDETTSVDI 76 A+ D+ G MG AE+ A ++ +R QDAFA+ S +A A G F+ E VD+ Sbjct: 156 AYSDQYRGRL--MGTFAEDCASEFGFTRAQQDAFAVQSTLRARQAISGGGFDWEVVPVDV 213 Query: 77 IERFPNLATGQIDIKTRTVNKDEGARADSTIEALTKLKPVFAAKGSVTAGNSSQTSDGAG 136 + G + +++DEG A +E + LKP F+ G+VTA NSS SDGA Sbjct: 214 AGK-----KGSV-----VISQDEGPMA-VNLERIATLKPAFSVDGTVTAANSSSISDGAA 262 Query: 137 EXWGGALILVSEKILKQFNLTPLARFASFAVRGVPPEIMGIGPKEAIPVALRAAGITQDQ 196 AL+L+ E + LTPLAR A PE P + G+ Sbjct: 263 -----ALLLMRESAALKQGLTPLARILGHASYAGAPEKFPTAPIGVLRKIFAKTGLDAAS 317 Query: 197 LDWIELNEAFAAQALAVIQDLGLDPAKVNPMGGAIALGHPLGATGAIRAATTIHALRRKN 256 D E+NEAFA +A ++L +D K+N GGA ALGHP+GA+GA + + AL+ + Sbjct: 318 TDLFEINEAFAVVPMAASRELDIDMEKINVHGGACALGHPIGASGARIIVSLLGALKARG 377 Query: 257 LKYGMVTMCVGTG 269 LK G+ ++C+G G Sbjct: 378 LKTGIASLCIGGG 390 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 772,036 Number of extensions: 30231 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 6 Length of query: 279 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 195 Effective length of database: 1,222,130 Effective search space: 238315350 Effective search space used: 238315350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)