BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0150.0025.p (706 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide de... 213 5e-56 gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit ... 59 1e-09 >gi|300310659|ref|YP_003774751.1| aerobic-type carbon monoxide dehydrogenase large subunit [Herbaspirillum seropedicae SmR1] Length = 759 Score = 213 bits (542), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 202/747 (27%), Positives = 330/747 (44%), Gaps = 59/747 (7%) Query: 4 TRRDFLKVTALAGGGFTLGVSLPGAVSESQAAGTLHTPNAWVHIADDNTITLISARSEMG 63 +R D L VT G PGA S P+ +V I + + + ++G Sbjct: 20 SRSDVLLVTRAPQPGVKPAPGQPGAASSY----VQPLPDVFVAILGEGQVLAFNGHVDLG 75 Query: 64 QGVYTSMPMLIAEELGVDIRKVKVEIAPVGEVYTNALLGGQLTGGSTSVRDGWEKLRVAG 123 G+ TS+ ++AEEL + + +V + + +T T S +++ LR A Sbjct: 76 TGIRTSLAQIVAEELSLSMEQVSMILG-----HTEEAPNQGPTIASATIQISAMPLRKAA 130 Query: 124 AQVRTMLITAAAQKWNIDAATLKAGDGKVTGP--GGRKATYGELADAASKLPV--PKDVV 179 AQ R L+ AA +W L+ G + GR +Y EL + P +V Sbjct: 131 AQAREHLLAMAAARWATPVGRLRVEAGCIIDADVAGRTISYFELLRGQRIVLTLEPGEVP 190 Query: 180 LKDPKDFKIIGKPTKRLDTPRKVNGTAVFGIDVKLPGMVYASLEQCP--------VIGGK 231 LK + ++G+ ++R+D P KV V+ DV++PGM++ + + P +G Sbjct: 191 LKPVSQYTLVGRSSQRVDIPAKVRAQPVYVHDVRVPGMLHGRVVRPPHPGRDGGDFVGRS 250 Query: 232 VVSFDASKAKAMPGVIDVVQIRDGVAVVADSYWHAKKAREAVTVTWDEGAGAAIDNASMM 291 +++ D +PG++ VV D + VVA+ A++A + V W +I M Sbjct: 251 LLAVDRQSVAHIPGLVAVVVEGDFIGVVAEREEQAQRAMRELKVQWK-----SIPPLPPM 305 Query: 292 EGI----RNAKDAPTPIKKTGDAGAAMKSAAKTMQAEYWSPLLAHATMEPQNFTADYKDG 347 + + R+ + + GD AA SAA ++ Y P HA++ P AD++ Sbjct: 306 DDLEARLRSLPARRRELVRQGDPDAASASAAGHIERTYVWPYQLHASIGPSCAVADWRPE 365 Query: 348 KCLVIGPAQFQQGTQGNVAAAVGLKPEDVTVKTTFLGGGFGRRLEYDFAVQAAQISKAVG 407 V Q + +++ L + V G +GR D AA +S+AVG Sbjct: 366 GLTVWSGTQNPHVMRIDLSRLCDLDEGSIEVIRLEASGCYGRNCADDVVADAALLSRAVG 425 Query: 408 KPVKLLWSREDDTTHDFYRPMAFHRMAAGLDASGKPVALTFQLTSQSVTQRAFGL---PK 464 +PV++ +RE + + + G+DA G+ FQ S L K Sbjct: 426 RPVRVQLTREQEHAWEPKGAAQLMDVCGGVDAQGRLSHYRFQTRYPSNDAPVLALLLTGK 485 Query: 465 GALDPFMAE----AAVVGYDIPNMTQELIEHDSGLRVGYWRSVSHALNAFANESFIDELA 520 A +P + E AV Y P+M + + +R G+ R VS N+FA+E FIDELA Sbjct: 486 IAPEPRVLEMGDRTAVPPYAYPHMQIDCDDVAPIVRAGWLRGVSAMPNSFAHEVFIDELA 545 Query: 521 AAAGKDPYQYRLALLDKQPRFANVLKIAATKAGW--------GKPLAKG--RSHGIALME 570 AG D +RLA L Q R + +L+ A KAGW G+ A G R GIA Sbjct: 546 ELAGADRLAFRLAHLPDQ-RASELLQAVAHKAGWVAHAQGSRGQVQADGKLRGRGIAYAR 604 Query: 571 GYDT--------YMAQVAEISVK--DNEITVHKMWVAADLGRMINPDTVEAQIESSIAFG 620 + + A V ++ V + V + V D G M+NP V Q+ +I Sbjct: 605 YVHSKFPGFGAAWSAWVIDVEVDPVTGALAVTSLVVGQDTGMMVNPAGVRHQMHGNILQS 664 Query: 621 LSSVLGSEITLDKGRVQQTNFHDYPVIRMSQMPRIDVTLVKSTEKPG-GIGEPATALVGP 679 LS VL + + YP++ +++P I++ L++ ++P G GE A+ Sbjct: 665 LSRVLKERVAFGPHGASSLEWGAYPILHFTEVPPIEIVLMERQDQPPMGAGESASVPSAA 724 Query: 680 AVANALFAATGKRVRKIPLSPDNIKSA 706 A++NALF ATG+R+R+ P + + I +A Sbjct: 725 ALSNALFDATGRRLRQPPFNAECILAA 751 >gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit B [Herbaspirillum seropedicae SmR1] Length = 789 Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 93/391 (23%), Positives = 150/391 (38%), Gaps = 57/391 (14%) Query: 183 PKDFKIIGKPTKRLDTPRKVNGTAVFGIDV-KLPGMVYASLEQCPVIGGKVVSFDASKAK 241 P D+ +GKP V G AV+ D+ +L G ++A+L +V + D K K Sbjct: 16 PHDWAAVGKPHPHESARLHVTGEAVYTDDIPELRGTLHAALGLSQKAHARVRAIDLEKVK 75 Query: 242 AMPGVIDVVQ-------------------IRDGVA---------VVADSYWHAKKAREAV 273 A PGV V + DG+ VVADS+ A++A Sbjct: 76 AAPGVKAVFTAADIPGDNECGAILHDDPVLADGLVQYVGQPLFIVVADSHELARRAARLA 135 Query: 274 TVTWDEGAGAAIDNASMMEGIRNAKDAPTPIKKTGDAGAAMKSAAKTMQAEYWSPLLAHA 333 + ++E AI ++ P + + G+ A+ A ++ ++ Sbjct: 136 VIDYEELP--AILTPRQAHAAQSYVLPPMHLSR-GEPAIALALAPHRLRGQFDVGGQEQF 192 Query: 334 TMEPQNFTADYKDGKCL-VIGPAQFQQGTQGNVAAAVGLKPEDVTVKTTFLGGGFGRRLE 392 +E Q A K+G+ + V Q Q +VA +GL DV V+ +GGGFG + Sbjct: 193 YLEGQISYAIPKEGRGMHVYCSTQHPSEMQHHVATVLGLASHDVLVECRRMGGGFGGKES 252 Query: 393 YDFAVQAAQISKA--VGKPVKLLWSREDDTTHDFYRPMAFHRMAAGLDASGKPVALTFQL 450 A A + +PVKL R+DD R + G D G+ VA ++ Sbjct: 253 QSALWACAAAVAAARLQRPVKLRADRDDDMMVTGKRHCFAYDYEIGYDDHGRIVAAKIEM 312 Query: 451 TSQSVTQRAFGLPKGALDPFMAEAAVVGYDIPNMTQELIEHDSGLRVGYWRSVSHALNAF 510 S++ P +A AV +D D +R ++ + + AF Sbjct: 313 ISRAGFSADLSGP-------VATRAVCHFD-----NAYYLSDVDIRAMCGKTNTQSNTAF 360 Query: 511 ----------ANESFIDELAAAAGKDPYQYR 531 A E ID++A G+DP + R Sbjct: 361 RGFGGPQGALAIEYIIDDIARHLGRDPLEIR 391 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,264,060 Number of extensions: 98356 Number of successful extensions: 343 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 2 Length of query: 706 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 614 Effective length of database: 1,184,250 Effective search space: 727129500 Effective search space used: 727129500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)