BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0019.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310416|ref|YP_003774508.1| MocR family transcription regul...    76   2e-15

>gi|300310416|ref|YP_003774508.1| MocR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 76.3 bits (186), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 47/77 (61%)

Query: 77  RXQGRPLPALKSLDQVDRVIYCGTFSKVMFPGLRLAYAVVPLGAVPRFQAVCASLNAGCP 136
           R  GRPL +L+ +D  DRV+Y GTFSK+MFPGLR+ + VVP      F    A L     
Sbjct: 331 RYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTGIAELYRNGQ 390

Query: 137 YLFQAGLADFIVQGHFS 153
              QA LADF+ +GHF+
Sbjct: 391 VFLQATLADFMAEGHFA 407



 Score = 57.8 bits (138), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query: 1   MAYPDPAGYGPLRERIATYLGLSRGVTCLSEQVFVTAGYRATLELVLRSLAALDDVFWFE 60
           + Y   AGY  LRE+IA YL ++R V C   QV +T G   +L++V++ L    D  W E
Sbjct: 187 LTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITTGIHQSLDIVVKLLGEHGDSAWVE 246

Query: 61  DPGYLQAQLFLRNAG 75
           DP Y   +  L + G
Sbjct: 247 DPCYWGTRSVLNSLG 261


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 596,054
Number of extensions: 21179
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)