BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0017.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313271|ref|YP_003777363.1| AraC family transcription regul...    82   8e-17

>gi|300313271|ref|YP_003777363.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 1/219 (0%)

Query: 75  VFFISPGQIHGWTSEIDASGYAINFSPEFFLQIFPRIEELAEFPFFHIANADPVLYLTPQ 134
           V  I P  +HG+     A G+ +   P               F    +      L   P 
Sbjct: 82  VLTIHPSLVHGFDFSEQAVGFVLTVDPHVVFSAGAGEGHGELFSPLFLRPMAIELGRAPD 141

Query: 135 QHDELFPLLKEIEKENAGDQRWRYDIVRSFLQILLTKLRRLHQPHDAESVLPRS-YSLTK 193
             + +  LL+ +  E+A  +     ++    + ++  L RL   H +  +  R  + L  
Sbjct: 142 LRERMETLLRLLIAESAAPRTGHTLMLEWLARSVMLLLVRLEADHRSAELTGRGDFELFS 201

Query: 194 RFKLLIEQHYLEFGSVQDYAARLFVTDRKLNEAVKTTTGRTATQLIHDRILMEAKRLLAQ 253
           RF+ L+EQH+ +   V  YA +L +T  +LN       G +A  L   R+++EA R L  
Sbjct: 202 RFRALVEQHFKQQWQVAVYADKLRITPSRLNRLCLKLAGHSAFDLAQQRLILEACRKLTY 261

Query: 254 SELSIAEISYRLNFDDFAYFCRFFKKNVQMTPGEFKXTQ 292
               +A I+Y L F D AYF R FK+++ +TP E++ T 
Sbjct: 262 VPSGVATIAYELGFQDPAYFSRLFKRHMGVTPKEYRRTH 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 977,559
Number of extensions: 38046
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)