BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0150.0011.p (302 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 118 7e-28 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 98 8e-22 gi|300310792|ref|YP_003774884.1| LysR family transcription regul... 94 2e-20 gi|300313217|ref|YP_003777309.1| LysR family transcription regul... 90 2e-19 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 89 4e-19 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 118 bits (295), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 3/281 (1%) Query: 4 LTNKVTLRHLQAFATLAGTNSFSKAAEQLSVTQPALSASIKQLENQLGTKLFDRTTHQIA 63 + ++ R LQAF LA F AA++ V+Q A SA I+++E G +LF+R T + Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 64 LTAQGAVVLEYAKHLLNTATNTFDDIRHAIGTGRHRVRIGAIPSAVTLIL---LSDMPND 120 LT +G + ++ A+ L++ F D+ + + RV I A+PS L L+D Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 121 ALLXEILLSDMPNDALLSSLHTGKLDFCVGIKPPDSMSLDTVTLFEDELVLIVSKNHPLS 180 + L D +D L L GK+D + P+ + DT L D L+ K+H L+ Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 181 DSKEVHWRQMAGEEIVMFAQGSVWEFASAALLQHGLAASRRYQMVHSESLYGVVRSGIAV 240 + + Q+AG E++ A+ + A+L+ G ++ H ++ ++ SG+ V Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATVAALIESGLGV 240 Query: 241 GIMPSLYTSYLRDDTLHVAPLRFPTLKRKIVLMRRNEVSRS 281 ++P L R L PL P LKR ++++ E S S Sbjct: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLS 281 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 98.2 bits (243), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 16/259 (6%) Query: 10 LRHLQAFATLAGTNSFSKAAEQLSVTQPALSASIKQLENQLGTKLFDRTTHQIALTAQGA 69 LRHL+ F +A T SFS+AAE L + QP LS I+QLE LG +L DR + IALT G Sbjct: 3 LRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMAGK 62 Query: 70 VVLEYAKHLLNTATNTFDDIRHAIGTGR-HRVRIGAIPSAVTLIL-------LSDMPNDA 121 E +L+ + R I GR H IG +PSA+ +L ++MP Sbjct: 63 FFYEQTLQVLSRLEQIEEGTR-VIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPE-- 119 Query: 122 LLXEILLSDMPNDALLSSLHTGKLDFCVGIKPPDSMSLDTVTLFEDELVLIVSKNHPLSD 181 EI S++ + +L +G++D G P + T+ E+ LV + HPL Sbjct: 120 --IEIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLA 177 Query: 182 SKEVHWRQMAGEEIVMFAQGSVWEFASAAL---LQHGLAASRRYQMVHSESLYGVVRSGI 238 +V Q+A + +++ +A L L S + ++ G+V +G+ Sbjct: 178 RNKVTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGV 237 Query: 239 AVGIMPSLYTSYLRDDTLH 257 V ++P R D ++ Sbjct: 238 GVTLVPRSVQGLHRSDVVY 256 >gi|300310792|ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 10/269 (3%) Query: 12 HLQAFATLAGTNSFSKAAEQLSVTQPALSASIKQLENQLGTKLFDRTTHQIALTAQGAVV 71 LQAF +A +SF AAE L +TQPALS I+ LE L +LFDRTT +++LT G + Sbjct: 9 ELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVSLTPAGELF 68 Query: 72 LEYAKHLLNTATNTFDDIRHAIGTGRHRVRIGAIPSAVTLIL---LSDMPNDALLXEILL 128 L +A+ ++ + + R V + +PS +L L + + Sbjct: 69 LVHAQAVMEELELAVKSVEQRMAQRREHVTVACVPSVANNLLPQVLKRYARSHANVRVRI 128 Query: 129 SDMPNDALLSSLHTGKLDFCVGIKPPDSMSLDTVTLFEDELVLIVSKNHPLSDSKEVHWR 188 D +L S+ G+ DF V +D L + + ++ +HPL+ ++W+ Sbjct: 129 IDESAADVLESVRKGEADFGVNFIGAQEAEIDFAELTRERYLAVMPTHHPLAAHASLNWK 188 Query: 189 QMAGEEI----VMFAQGSVWEFASAALLQHGLAASRRYQMVHSESLYGVVRSGIAVGIMP 244 +AGE++ S+ + A + + Q + +Y+ H +V +G+ V ++P Sbjct: 189 SLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVI---QYETNHVAGAISLVAAGLGVALLP 245 Query: 245 SLYTSYLRDDTLHVAPLRFPTLKRKIVLM 273 L + P+ P L R + L+ Sbjct: 246 ELAIRNAPYKGIVARPVTSPVLSRAMGLI 274 >gi|300313217|ref|YP_003777309.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 296 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 16/243 (6%) Query: 10 LRHLQAFATLAGTNSFSKAAEQLSVTQPALSASIKQLENQLGTKLFDRTTHQIALTAQGA 69 L L+ F T+ ++AAE+L+ Q ++ IKQLE +G LF R ++ LTA G Sbjct: 12 LAELEIFRTVVAEGGVTRAAERLNRVQSNVTTRIKQLEQSMGVPLFVRDRRRMVLTAAGE 71 Query: 70 VVLEYAKHLLNTATNTFDDIRHAIG--TGRHRVRIGAIPSAVTLIL---LSDMPNDALLX 124 +L+YA+ +L+ A + R A+ + R R+RIG++ SA L L++ Sbjct: 72 ALLDYAERILDLA----QEARQAVAPQSPRGRLRIGSMESAAASRLPGPLAEFHQRWPEV 127 Query: 125 EILLSDMPNDALLSSLHTGKLDFCVGIKPPDSMSLDTVTLFEDELVLIVSKNHPLSDSKE 184 + LS P D L++ + KLD + P + D LF +EL+L+ ++H + E Sbjct: 128 RLELSTAPTDVLMAQVRACKLDAALVAGPVSDPAFDATPLFREELLLVTPRSHRRVRAPE 187 Query: 185 VHWRQMAGEEIVMFAQGSVW-EFASAALLQHGLAAS--RRYQMVHSESLYGVVRSGIAVG 241 ++ + +++F QG + A A HG R ++ ++ V +G V Sbjct: 188 ----EVMLDTLIVFEQGCAYRRHAEAWFAGHGAGRQLPRTLELASYHAILACVSAGAGVA 243 Query: 242 IMP 244 ++P Sbjct: 244 VVP 246 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 127/278 (45%), Gaps = 12/278 (4%) Query: 7 KVTLRHLQAFATLAGTNSFSKAAEQLSVTQPALSASIKQLENQLGTKLFDRTTHQIALTA 66 K+ + +QAF +A SF AA L VTQ A++ +++LE+ LG L +RTT IALT Sbjct: 2 KIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTE 61 Query: 67 QGAVVLEYAKHLLNTATNTFDDIRHAIGTGRHRVRIGAIPSAVTLILL-------SDMPN 119 G L A+ LL +IR R V I +P+ L + P+ Sbjct: 62 IGRDFLPQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYPH 121 Query: 120 DALLXEILLSDMPNDALLSSLHTGKLDFCVGIKPPDSMSLDTVTLFEDELVLIVSKNHPL 179 + I + D + A+ ++ +++F + I L +V L ED VLI K+HPL Sbjct: 122 N----RIKILDHASSAVAEAVLRREVEFGIHIAGEHHPELISVALTEDRYVLICPKDHPL 177 Query: 180 SDSKEVHWRQMAGEEIVMFAQ-GSVWEFASAALLQHGLAASRRYQMVHSESLYGVVRSGI 238 + + + WRQ+ ++ + S L +G A Y++ S + G+V G+ Sbjct: 178 ARRRRIAWRQLQSYPLIFAGEVSSNRALLDPTLKANGFALRSFYEVQRSSTAVGLVAQGV 237 Query: 239 AVGIMPSLYTSYLRDDTLHVAPLRFPTLKRKIVLMRRN 276 V ++P L T+ V L P + R +VL+ R Sbjct: 238 GVAVVPKLAIQEGAYPTVRVIELVDPVVSRSLVLITRK 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 868,940 Number of extensions: 34260 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 47 Length of query: 302 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 217 Effective length of database: 1,217,395 Effective search space: 264174715 Effective search space used: 264174715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)