BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0010.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310676|ref|YP_003774768.1| outer membrane protein (porin) ...    67   5e-13
gi|300313813|ref|YP_003777905.1| transmembrane outer membrane po...    67   5e-13
gi|300311557|ref|YP_003775649.1| outer membrane porin [Herbaspir...    66   1e-12
gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC fami...    62   3e-11
gi|300313395|ref|YP_003777487.1| porin transmembrane protein [He...    60   8e-11

>gi|300310676|ref|YP_003774768.1| outer membrane protein (porin)
          signal peptide protein [Herbaspirillum seropedicae
          SmR1]
          Length = 352

 Score = 67.4 bits (163), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 3  MKQWMIGAVAVPAMLAG--AQVHAQSKLEIYGLISGGVGYLTNQ-----GGPHNLEALSG 55
          MK+ ++    V AMLAG     HAQS + IYGLI  G+ Y ++      GG   L   SG
Sbjct: 1  MKKTLL----VAAMLAGGATTAHAQSSVSIYGLIDLGLTYYSSAPKSGGGGARLLRMDSG 56

Query: 56 TNQNPRIGFRGQEDLGGGSKAIFNLENGF 84
            Q  RIGF+G EDLGGG  A F LE GF
Sbjct: 57 IAQGSRIGFKGTEDLGGGMNAFFTLETGF 85


>gi|300313813|ref|YP_003777905.1| transmembrane outer membrane
          porin signal peptide protein [Herbaspirillum
          seropedicae SmR1]
          Length = 354

 Score = 67.4 bits (163), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 21 QVHAQSKLEIYGLISGGVGYLTNQGGPHNLEAL----SGTNQNPRIGFRGQEDLGGGSKA 76
           V AQS + IYGL+  GV YL N  GP+   ++    SG     RIGFRG EDLGGG KA
Sbjct: 18 SVQAQSSVTIYGLVDTGVEYL-NNAGPNGAGSVTRMTSGATNTSRIGFRGTEDLGGGLKA 76

Query: 77 IFNLENGF 84
          +F LENGF
Sbjct: 77 LFQLENGF 84


>gi|300311557|ref|YP_003775649.1| outer membrane porin
          [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score = 66.2 bits (160), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 18 AGAQVHAQSKLEIYGLISGGVGYLTNQG--GPHNLEALSGTNQNPRIGFRGQEDLGGGSK 75
          +G    AQS + IYG++   + YL+N    G  N+   +G   N RIGF+G EDLGGG K
Sbjct: 15 SGGAAFAQSNVTIYGIVDTSIHYLSNANAQGNSNVRMDNGAIANSRIGFKGTEDLGGGLK 74

Query: 76 AIFNLENGFTPARG 89
          A+F LENGF+   G
Sbjct: 75 AMFQLENGFSSDTG 88


>gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC
          family protein [Herbaspirillum seropedicae SmR1]
          Length = 346

 Score = 61.6 bits (148), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 4  KQWMIGAVAVPAMLAGAQVHAQSKLEIYGLISGGVGYLTNQGGPHNLEAL-SGTNQNPRI 62
          K W   AV V ++L      AQS + +YG+I   +GY TN  G  ++ +L SG  Q  R+
Sbjct: 3  KAW---AVGVASLLCAGGALAQSNVTLYGVIDTYMGY-TNATGKGSVASLDSGGYQASRV 58

Query: 63 GFRGQEDLGGGSKAIFNLENGFTPARG 89
          GF+G EDLGGG +A F +ENGF    G
Sbjct: 59 GFKGSEDLGGGLRANFQMENGFASDSG 85


>gi|300313395|ref|YP_003777487.1| porin transmembrane protein
          [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score = 60.1 bits (144), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%)

Query: 24 AQSKLEIYGLISGGVGYLTNQGGPHNLEALSGTNQNPRIGFRGQEDLGGGSKAIFNLENG 83
          AQS + +YG +  G+ Y +NQGG  N    SG     ++G  G EDLGGG+ A+F LENG
Sbjct: 33 AQSSVTLYGTVDLGLAYSSNQGGASNTYMNSGALAASKLGLTGTEDLGGGNMALFRLENG 92

Query: 84 FTPARG 89
          F    G
Sbjct: 93 FNADTG 98


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 453,191
Number of extensions: 17493
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 10
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)