BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0150.0002.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC trans...   129   2e-31
gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC trans...    76   2e-15

>gi|300310411|ref|YP_003774503.1| spermidine/putrescine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  129 bits (325), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 140/238 (58%)

Query: 20  GPFVIVFLAGFSAGDTLAFPPASYSLRWIGEVLVADEFQRAFCTSLEIGLLATVIALLLG 79
            P +++    FS    L +P  S+SLRW   +  +D++ RA   S  +   ATVIA +LG
Sbjct: 35  SPILVMIPLSFSDSSFLMYPIKSFSLRWYENLFSSDDWVRAAQNSFIVAPAATVIATVLG 94

Query: 80  VPVAYAMSRMPPPGMGAIKQVLTSPLIIPAMLVGLGLLRHFVLVADAPVFLGLLVGHIGL 139
              A  +++    G G +  +L SP+I+P ++VG+G+   F  +  +  +LGL++ H  L
Sbjct: 95  TLAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFFARIGLSDSYLGLILAHAAL 154

Query: 140 LTPYAVRVVYASLVNLRVDIEEAAVTLGASRLQTFFLIVLPNIRSAVIAAFFLAFVTSFN 199
             P+ V  V A+L     ++  A+++LGAS L+TFF + LP I   +I+    AF TSF+
Sbjct: 155 GAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRVTLPVIAPGLISGALFAFATSFD 214

Query: 200 QVPVSLFLTGPGISTLPIEMLGHMENSFDPSIAALSTLLVLFTMAFVLVTEKVLGISK 257
           +V ++LF+ GP  +TLP +M   ++++  P+IAAL+T+L++F+   +L  E + G +K
Sbjct: 215 EVVLTLFVAGPEQATLPRQMFAGIKDNISPTIAALATILIIFSTCLLLALEWLRGRNK 272


>gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 76.3 bits (186), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 8/210 (3%)

Query: 13  LVFLFLLGPFVIVFLAGFSAGDTLAFPPASYSLRWIGEVLVADEFQRAFCTSLEIGLLAT 72
           LV  FL+ P V+  LAG +    +    +  +LRW+ +V   + +Q     SL I L   
Sbjct: 16  LVCAFLVVPVVLSMLAGVTENFFVGLS-SGLTLRWVAQVW--EMYQPTIWRSLFIALACL 72

Query: 73  VIALLLGVPVAYAMSRMPPPG---MGAIKQVLTSPLIIPAMLVGLGLLRHFVLVADAPVF 129
            + L  GVP+AY ++R           I+++L  P+ +P +   L L+  +    +    
Sbjct: 73  AVTLAAGVPLAYMLARYRGGNSRLARVIEELLMMPVAVPGLATALALIMAYGQYREFRAS 132

Query: 130 LG-LLVGHIGLLTPYAVRVVYASLVNLRV-DIEEAAVTLGASRLQTFFLIVLPNIRSAVI 187
           L  +LVGH+    P+ VR V A + + ++  +EEAA +LGA R++ FF IV+PN  S ++
Sbjct: 133 LWFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFFGIVIPNAASGIL 192

Query: 188 AAFFLAFVTSFNQVPVSLFLTGPGISTLPI 217
           A   +    S  +  ++  L  P   TLP+
Sbjct: 193 AGALMVVTLSIGEFNITWMLHTPLTQTLPV 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.144    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 827,012
Number of extensions: 36437
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 9
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)