BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0011.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase [H...   479   e-137

>gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  479 bits (1234), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/315 (72%), Positives = 258/315 (81%), Gaps = 1/315 (0%)

Query: 1   VTAILQARQDSN-AGGVTLLNCDNLRHNGERFFGGLQQFLALRGHHQLLEWVRANVASPN 59
           + AIL AR  ++    +TLLNCDNLRHNGERF  GL+QFL LRG   L+ W++AN  SPN
Sbjct: 161 IAAILHARSQAHPQAALTLLNCDNLRHNGERFRDGLRQFLTLRGETALVSWMQANTTSPN 220

Query: 60  SMVDRITPRPTDAVRQRVKEATGVDDPCALMAESFIQWVIEDDFKAGRPALEKVGVEMVA 119
           +MVDRITPRPT AV QRVKEATG+DDPCALM ESFIQWVIEDDFKAGRP LE+ GVEMV 
Sbjct: 221 AMVDRITPRPTAAVAQRVKEATGIDDPCALMGESFIQWVIEDDFKAGRPRLEEAGVEMVQ 280

Query: 120 SVLPYEEAKIRILNASHSCIAWAGTMIGLGYIHEGTMHEDIRRMAYDYITQDVIPCLTPS 179
           SVLPYEEAKIRILNASHSCIAWAGT+ GL YIHEGT+ +DIR+MAYDY+TQDVI CLTPS
Sbjct: 281 SVLPYEEAKIRILNASHSCIAWAGTLAGLQYIHEGTLRDDIRQMAYDYVTQDVIACLTPS 340

Query: 180 PLDLEAYRDTTLARFANPAIQDTNQRVAADGFSKIPGFIRPTISDSLARSHQARATAQVA 239
           P+DL AYRDTTLARF+NPAIQDTNQRVAADG+SKIPGFIRPT+ +S+A     RATA + 
Sbjct: 341 PIDLAAYRDTTLARFSNPAIQDTNQRVAADGYSKIPGFIRPTLQESMAAGRDPRATAMLP 400

Query: 240 ALFFAFLQRWRRGELAYEYQDGVFDPAAVGAMLDGPDPVRAYCNDPLLWGELAGSVQLER 299
           ALF  FLQRW  G+L YEYQDG+FDPAAV  ML   DPV+A+C D +LWGELAG  +L +
Sbjct: 401 ALFLVFLQRWNAGQLPYEYQDGIFDPAAVRTMLGAADPVQAFCADAVLWGELAGDARLTK 460

Query: 300 LLREGVVSVNAWLAA 314
           L+RE V  V  WL A
Sbjct: 461 LVREAVQRVQQWLGA 475


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,014,256
Number of extensions: 41688
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)