BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0008.p
         (117 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H...   102   9e-24
gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H...    69   7e-14
gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H...    66   7e-13
gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp...    63   7e-12
gi|300313756|ref|YP_003777848.1| nitrate/sulfonate/bicarbonate A...    62   8e-12

>gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  102 bits (254), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/51 (92%), Positives = 50/51 (98%)

Query: 1  MAAVTIRNLAKRYDDNEVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIXG 51
          MAAV+IRNLAKRYDDNEVMRDINL+I+DGEFVVFVGPSGCGKSTLLRMI G
Sbjct: 1  MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAG 51



 Score = 62.4 bits (150), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query: 55  DFSYLYAATDASDEPLILRVPDSLQLASRSVIGVGAEAHRCHLFREDGSAVKRL 108
           DFSYLYAA + S++ LILRVPDSL     SV+ + A+  RCHLF  DG A+ RL
Sbjct: 309 DFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQALPRL 362


>gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 361

 Score = 69.3 bits (168), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 1  MAAVTIRNLAKRYDDNEVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIXG 51
          MA+V IR + K++   +++R +++DI DGEF V VGPSGCGKSTLLRM+ G
Sbjct: 1  MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAG 51


>gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score = 66.2 bits (160), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 1  MAAVTIRNLAKRYDDN-EVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIXG 51
          MA V I+ L K YD   +V+  +NLDI DGEF V VGPSGCGKSTLLRM+ G
Sbjct: 1  MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCG 52


>gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score = 62.8 bits (151), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 1  MAAVTIRNLAKRYDDNE-VMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIXG 51
          MA++T+R   K Y D   V+R+++LDI + EF VF+GPSGCGKSTLLR I G
Sbjct: 1  MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAG 52


>gi|300313756|ref|YP_003777848.1| nitrate/sulfonate/bicarbonate
          ABC transporter ATPase [Herbaspirillum seropedicae
          SmR1]
          Length = 258

 Score = 62.4 bits (150), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)

Query: 1  MAAVTIRNLAKRYDDNEVMRDINLDIDDGEFVVFVGPSGCGKSTLLRMIXGN 52
          M+ + IRN+ ++YD N V+  +NL +++G+F   VG SGCGKST LR++ G 
Sbjct: 1  MSYIEIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQ 52


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 354,077
Number of extensions: 12971
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 12
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 13
Length of query: 117
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,269,480
Effective search space: 54587640
Effective search space used: 54587640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)