BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0007.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [...   256   1e-69
gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...    83   1e-17

>gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  256 bits (653), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 167/238 (70%), Gaps = 17/238 (7%)

Query: 2   KPEITHLVCDCDGVLLDSESIALRVLHEHLLPLLENPA------DGDK-------LHHAI 48
           +  ITHL+CDCDGVLLDSESIALRVLH  LLPLL   +      DG++       LH AI
Sbjct: 4   RQAITHLICDCDGVLLDSESIALRVLHRELLPLLPAWSGAGGADDGEQEEQRSAALHAAI 63

Query: 49  ASRLGMFTELLLDELDVEKX----AAQYAAINTAVGIACGDEVQLVPGIADALQKIDLPK 104
           A RLGM+T++LL E+D+E      AAQ   I+  V +ACGDE   VPG+ +ALQ I LP+
Sbjct: 64  AHRLGMYTDILLGEVDMEFELGLDAAQAERIHQTVALACGDEALPVPGVVEALQAIRLPR 123

Query: 105 AVASNSSTDRIIKGLQRCDLLALFDGHIHSAHDVGRPKPAPHVYLAAAAGYGVAPQHCVA 164
           AVASNS   RI  GL+RC L   F G I+S HDV  PKPAP VYLAAAAG+GV P  CVA
Sbjct: 124 AVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPSRCVA 183

Query: 165 VDDSVTGVRAASSAGMRVLGFTGVAHDRHGMRQKLLDAGAELVFDDMQELPVLIAALL 222
           VDDSVTGVRAA +AGM VLGFTGVAHDR  M +KL DAGA  VF+DM+  P L++ L+
Sbjct: 184 VDDSVTGVRAAVAAGMHVLGFTGVAHDRKTMARKLKDAGAHQVFEDMKLFPQLVSELI 241


>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 16/186 (8%)

Query: 8   LVCDCDGVLLDSESIALRVLHEHL--LPLLENPAD------GDKLHHAIASRLGMFTELL 59
           ++ DCDG L+DSE +A R   E++    +   P D      G  +   IA    +  + L
Sbjct: 11  VIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIAHVAQLRGQAL 70

Query: 60  LDELDVEKXAAQYAAINTAVGIACGDEVQLVPGIADALQKIDLPKAVASNSSTDRIIKGL 119
               + E        +   +G+     +Q + G  + ++++ +P A+ASN+   +I   L
Sbjct: 71  PAHFEQE--------LRARMGVMLEQHLQPINGALEMVEQLQIPFALASNAPHHKIELCL 122

Query: 120 QRCDLLALFDGHIHSAHDVGRPKPAPHVYLAAAAGYGVAPQHCVAVDDSVTGVRAASSAG 179
           +   LL  F G I SA+DV R KP P ++L AA   GV P  C  V+DS+ GV+A  +AG
Sbjct: 123 RVTGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLAAG 182

Query: 180 MRVLGF 185
           M+V+  
Sbjct: 183 MKVIAL 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 616,811
Number of extensions: 21985
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)