BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0002.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309781|ref|YP_003773873.1| sugar ABC transporter periplasm... 426 e-121 gi|300312690|ref|YP_003776782.1| sugar ABC transporter periplasm... 94 7e-21 >gi|300309781|ref|YP_003773873.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 451 Score = 426 bits (1096), Expect = e-121, Method: Compositional matrix adjust. Identities = 198/223 (88%), Positives = 210/223 (94%) Query: 1 MEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKTVR 60 MEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIK VR Sbjct: 74 MEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKPVR 133 Query: 61 EGLTSDGKLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAKGVYG 120 EGL+ DGKLYALPFYAESSMTYYRKDLF QK L MP++PTW+EI KLAAQLHDPAKGVYG Sbjct: 134 EGLSVDGKLYALPFYAESSMTYYRKDLFEQKKLTMPQRPTWDEIAKLAAQLHDPAKGVYG 193 Query: 121 ICLRGRAGWGENMALVGTMVNAYGGRWFDEKWQPQLDTPEWKQAVNFYVDLMRKSGPPGA 180 ICLRGRAGWGENMA++ TM NA+GGRWFDE+WQPQL +PEWK++V FYVDLMRK GPPGA Sbjct: 194 ICLRGRAGWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVAFYVDLMRKYGPPGA 253 Query: 181 SSNGFNENLVLFSGGKCGMWVDATVAAGMLYHGKDSKVSDKVA 223 SSNGFNENLVLFS GKCGMWVDATVAAGMLYHGKDSKV+DK A Sbjct: 254 SSNGFNENLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTA 296 >gi|300312690|ref|YP_003776782.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 94.4 bits (233), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 5/221 (2%) Query: 3 ESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTG-LPADYDEADLIKTVRE 61 E+ R + D AT +G + + + +A GW+ P+ P D D D + R Sbjct: 76 ENDRRAKSRLDAATKAGSYQVYYVDEANVAEFASAGWIVPLLKYFPKDADYDDFLPGRRA 135 Query: 62 GLTSDGKLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAKGVYGI 121 + Y P S +YR+DL + L +P T +E+ +LH P VYG Sbjct: 136 VASYKDVAYFAPLIGGSDFLFYRRDLLEKAGLPVPR--TLDELVADIKKLHSP-PSVYGW 192 Query: 122 CLRGRAGWGENMALVGTMVNAYGGRWFDEKWQPQLDTPEWKQAVNFYVDLMRKSGPPGAS 181 RG+ G G N+ + A GG+W D+ QP ++P +A Y DL K PPGA+ Sbjct: 193 VARGQRGSGMNVWRWAPFMLAQGGQWTDKNNQPAFNSPAAVKATQLYADLF-KYAPPGAA 251 Query: 182 SNGFNENLVLFSGGKCGMWVDATVAAGMLYHGKDSKVSDKV 222 + ++ L F GK +++T A + S V+DKV Sbjct: 252 TYDWSNALEAFRSGKVAFMIESTPFADWMEDSSKSSVADKV 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 812,445 Number of extensions: 35133 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 2 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)