BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0001.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309781|ref|YP_003773873.1| sugar ABC transporter periplasm...   350   6e-98
gi|300312690|ref|YP_003776782.1| sugar ABC transporter periplasm...    55   7e-09

>gi|300309781|ref|YP_003773873.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  350 bits (897), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 175/216 (81%), Positives = 185/216 (85%), Gaps = 6/216 (2%)

Query: 3   LRAPAFPLARL-----AAAIAVFGFAGLAAADPVTLNIASINNPDMIELQKLSPQFEKAN 57
           +R  AF   R+     AAAI+    AGLA A+PVTLNIASINNPDMIELQKL+P FEKAN
Sbjct: 5   VRPRAFGFTRVRFTLAAAAISTLFAAGLAQAEPVTLNIASINNPDMIELQKLAPAFEKAN 64

Query: 58  PDIKLRWVTMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYD 117
           PDIKLRWVTMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYD
Sbjct: 65  PDIKLRWVTMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYD 124

Query: 118 EADLIKTVREGLTSDGKLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQL 177
           EADLIK VREGL+ DGKLYALPFYAESSMTYYRKDLF QK L MP++PTW+EI KLAAQL
Sbjct: 125 EADLIKPVREGLSVDGKLYALPFYAESSMTYYRKDLFEQKKLTMPQRPTWDEIAKLAAQL 184

Query: 178 HDPAKGVYGICLRGRAGWGEKKKPIPTSSCA-GSRW 212
           HDPAKGVYGICLRGRAGWGE    I T + A G RW
Sbjct: 185 HDPAKGVYGICLRGRAGWGENMAIITTMANAWGGRW 220


>gi|300312690|ref|YP_003776782.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score = 54.7 bits (130), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 18/194 (9%)

Query: 13  LAAAIAVFGFAGLAAADPVTLNIASINNPDMIELQKLS---PQFEKANPDIKLRWVT--- 66
           L AA AV G     AA P+  +  S N P +  L + S      EK+  D + R  T   
Sbjct: 16  LGAACAVLG-----AALPLVASAQSCNVPVLKVLAQKSLGLTVMEKSLADYQKRSGTRIE 70

Query: 67  ---MEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTG-LPADYDEADLI 122
                E+  R +   D AT +G + +  +       +A  GW+ P+    P D D  D +
Sbjct: 71  ISYFGENDRRAKSRLDAATKAGSYQVYYVDEANVAEFASAGWIVPLLKYFPKDADYDDFL 130

Query: 123 KTVREGLTSDGKLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAK 182
              R   +     Y  P    S   +YR+DL  +  L +P   T +E+     +LH P  
Sbjct: 131 PGRRAVASYKDVAYFAPLIGGSDFLFYRRDLLEKAGLPVPR--TLDELVADIKKLHSP-P 187

Query: 183 GVYGICLRGRAGWG 196
            VYG   RG+ G G
Sbjct: 188 SVYGWVARGQRGSG 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 625,531
Number of extensions: 24680
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)