BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0063.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...   182   5e-48
gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbas...    54   4e-09

>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  182 bits (463), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 95/103 (92%)

Query: 1   VKNIAAYLNAQAPKPGAAKSKDTLELGKQIWRGGIASKNVPACAGCHSPNGAGIPAQYPR 60
           + N+AA+L AQAPKPGAAK+KDT++LGK IWR GIA+KNVPACAGCHSPNGAGIPAQYPR
Sbjct: 111 IHNVAAFLAAQAPKPGAAKNKDTIDLGKHIWRAGIAAKNVPACAGCHSPNGAGIPAQYPR 170

Query: 61  LAGQHQDYTVTELTAFRGGTRSNSPQMSTIADRLSDKEIKAVA 103
           LAGQHQDYTV +LT FRGG R+NS QM+TI++RLSDKEIKAVA
Sbjct: 171 LAGQHQDYTVAQLTNFRGGARTNSVQMTTISERLSDKEIKAVA 213



 Score = 62.8 bits (151), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 27  GKQIWRGGIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVTELTAFRGGTRSNSPQ 86
           G+ ++  G +++N+ AC  CH   G     Q P+LAGQH+ Y   +L  FR   R N+P 
Sbjct: 40  GEALYTNGDSARNIVACVSCHGAAGNSTITQNPKLAGQHEAYIAKQLLNFRTPDR-NNPV 98

Query: 87  MSTIADRLSDKEIKAVAA 104
           MS +A  LSD++I  VAA
Sbjct: 99  MSPMAKALSDEDIHNVAA 116


>gi|300310720|ref|YP_003774812.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score = 53.5 bits (127), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 6/110 (5%)

Query: 1   VKNIAAYLNAQAPK--PGAAK--SKDTLELGKQIWRGGIASKNVPACAGCHSPNGAGIPA 56
           ++ IA +   Q P   P A+   S   LE G+++   G   + +PACA CH+P+  G+  
Sbjct: 108 LQQIARFFADQHPPYPPPASNEASATVLERGRRLVTEGDPQRRLPACAACHAPSLGGVQP 167

Query: 57  QYPRLAGQHQDYTVTELTAFRGGTRS-NSPQ-MSTIADRLSDKEIKAVAA 104
             P L G  +DY   +L A+R G R+  +P  M+ +A  LS +EI A ++
Sbjct: 168 GIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMAAVARALSPEEINAASS 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 381,271
Number of extensions: 14978
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)