BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0062.p
         (505 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis tr...   739   0.0  

>gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/468 (75%), Positives = 406/468 (86%), Gaps = 6/468 (1%)

Query: 11  MRFAISLLTLIAIASIIGTVLQQNQPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM 70
           MRFAISLLTLIAIAS+IGTV++QN+PMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM
Sbjct: 1   MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM 60

Query: 71  GFLVLSTSLCIARNGPKMLKDISSWRENVREQSLRNFHHKVEWTAAVPAAGLAQQLAQRI 130
           GFLVLSTSLCIARN PKML+D+ SWR+NVREQSLRNFHHK EW  A   A  A +L +++
Sbjct: 61  GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEWHTAEAPAQAAARLVRQV 120

Query: 131 GANGYKVKLVEKDGATLIAAKKGAANKWGYIFAHSAIVIICLGGLLDSDLPIRFQQWFYG 190
           GA GYK +L +K+G TL+AAK+GAANKWGYIFAH+AIVIICLGGLLDSDLPIRFQQWFYG
Sbjct: 121 GARGYKTRLADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG 180

Query: 191 KTPFAGNGVISQIPAEHRLGLGNPTFRGNTLIPEGASSSTAIIPQQNGVMIQDLPFTIQL 250
           K+ F GNG+I++IP  +RLGL NPTFRGNTLIPEG+SSSTAIIPQ++GVMIQDLPFTI+L
Sbjct: 181 KSAFTGNGIIAEIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTIRL 240

Query: 251 KRFVIDYYSTGMPKLFASDVIVRDNATGKDFAATIKVNEPLIYNGIAVYQSSFEDGGSKL 310
           KRF+ID+YSTGMPKLFAS+V+VRD+ TGK+ AATIKVNEPLIY G+A+YQSSFEDGGSKL
Sbjct: 241 KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIYQGVAIYQSSFEDGGSKL 300

Query: 311 RLTGHAMTGAADKRFEIAGEVNGSTPLSAAKDNEYTVEWSGFRPFNVENMN---NSGNSG 367
           +L G+ M G ++  F ++G VNGST L A    +YT+EWSGFRPFNVENM      G++ 
Sbjct: 301 KLVGYPMRGGSNSHFALSGVVNGSTALPAGL-GDYTIEWSGFRPFNVENMQASGGGGSTS 359

Query: 368 NDVRSVN--KSINKSFAEGLDKHLGSGAKNANSKDLKNVGPSVQYKLRDKTGQAREFLNY 425
            D R+VN  KS+N+   + LDKHLGS AKNANSKD KNVGPSVQYKLRDKTGQARE+ NY
Sbjct: 360 GDARAVNVGKSVNRGLMDSLDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYFNY 419

Query: 426 MQPVLVDGAYVFLAGVRDMPDEQFRYLRIPADDEDSVDEWMRLRAALA 473
           MQ + +DGAYVFLAG+R+ PD+ FRYLRIPADD DSV EWMRLRAALA
Sbjct: 420 MQSLSIDGAYVFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALA 467


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,584,927
Number of extensions: 69607
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 416
Effective length of database: 1,198,455
Effective search space: 498557280
Effective search space used: 498557280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)