BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0059.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309497|ref|YP_003773589.1| ABC transporter permease [Herba...   676   0.0  

>gi|300309497|ref|YP_003773589.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/384 (87%), Positives = 360/384 (93%), Gaps = 1/384 (0%)

Query: 1   MELSQ-THAYSQDIGFFRRLSVLDWIYAAALVVASLFALSRYGSHMDYYEKAVLLLAAPT 59
           MEL+Q   AY+++ GFFRRL VLDWIYAAALV  SL+A  R+GS+MDYYEKAVLLLAAPT
Sbjct: 1   MELTQHNQAYAEEQGFFRRLGVLDWIYAAALVAGSLYAFGRFGSYMDYYEKAVLLLAAPT 60

Query: 60  FAWLGWHWKSVRWLMALLAVLALSAIAMYGGALDMADKKFFLKYLLSSQSAILWMSALFV 119
           FAWLGWHWK VR LM ++AVL+L AIA+YGGAL++ADKKFFLKY+LSSQSAILWMSALF 
Sbjct: 61  FAWLGWHWKPVRLLMLVIAVLSLGAIALYGGALELADKKFFLKYMLSSQSAILWMSALFC 120

Query: 120 LSTLFYWVGLVARSGTGAALGSKLCWAAVVLGFTGMLVRWYESYLIGPDIGHIPISNLYE 179
           LSTLFYW GL   +GTG A+GS+LCWAAVVLGFTG++VRWYESYLIGPD+GHIPISNLYE
Sbjct: 121 LSTLFYWGGLATTAGTGNAIGSRLCWAAVVLGFTGLMVRWYESYLIGPDVGHIPISNLYE 180

Query: 180 VFILFCMITALFYLYYEERYATRQLGAFVLLVISAAVGFLLWYTVSRDAAEIQPLVPALQ 239
           VF+LFC+ITALFYLYYEERYATRQLGAFVL VI+AAV FL+WYTVSRDAAEIQPLVPALQ
Sbjct: 181 VFVLFCLITALFYLYYEERYATRQLGAFVLTVITAAVAFLMWYTVSRDAAEIQPLVPALQ 240

Query: 240 SWWMKIHVPANFIGYGTFALAAMVAVAYLLKSKGYLEDRLPSLEVLDDVMYKAIAVGFAF 299
           SWWMKIHVPANFIGYGTFALAAMVAVAYLL+ KGYL DRLPSLEVLDDVMYKAIAVGFAF
Sbjct: 241 SWWMKIHVPANFIGYGTFALAAMVAVAYLLRQKGYLADRLPSLEVLDDVMYKAIAVGFAF 300

Query: 300 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQVAAWWALVG 359
           FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQ AAWWALVG
Sbjct: 301 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQAAAWWALVG 360

Query: 360 LLVTTFAFLGVNMFLSGLHSYGEL 383
           LLVTTFAFLGVNMFLSGLHSYGEL
Sbjct: 361 LLVTTFAFLGVNMFLSGLHSYGEL 384


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,122,866
Number of extensions: 43060
Number of successful extensions: 235
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 2
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)