BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0054.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309500|ref|YP_003773592.1| glycerol-3-phosphate dehydrogen...   303   1e-83

>gi|300309500|ref|YP_003773592.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  303 bits (777), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 168/208 (80%), Gaps = 1/208 (0%)

Query: 202 GLQPWGTALAIVLAQRHQVVLWGRDSQAMQTASLQRENMAYLRGFHLPESLVVTADFART 261
           G   WGTALAI LA +HQV LWGR++QAMQ A  QREN  YL GF LPE L VTADF   
Sbjct: 7   GAGAWGTALAIPLAHKHQVTLWGRNAQAMQAADRQRENSLYLPGFPLPEGLAVTADFDAA 66

Query: 262 VDHVTS-CQDSLLIVASSVSGLRALAEMLRDHPIPNIVWLCKGLEEQTRLLPHQIVREVL 320
           V HV     DSLLI ASSVSGLR LA  LR +PIPN+VWLCKGLEE TRLLPHQ+V+EVL
Sbjct: 67  VRHVCDDPADSLLIAASSVSGLRELAGQLRAYPIPNLVWLCKGLEEGTRLLPHQVVQEVL 126

Query: 321 GDKIPASALSGPSFAQEVARGLPCALTIASHDKALCERVVGAVHGGNLRVYSSDDLIGVE 380
           G ++ A ALSGPSFAQEVARGLPCALTIA  D ALCERVV AVHG N+R+YSSDDLIGVE
Sbjct: 127 GPQLAAGALSGPSFAQEVARGLPCALTIAGADAALCERVVAAVHGNNIRIYSSDDLIGVE 186

Query: 381 IGGAVKNILAIATGAADGLQLGLNARAA 408
           IGGAVKNILAIATG ADGL LGLNARAA
Sbjct: 187 IGGAVKNILAIATGVADGLALGLNARAA 214



 Score =  299 bits (765), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 167/205 (81%), Gaps = 2/205 (0%)

Query: 1   MNISILGAG-WGTALAIVLAQRHQVVLWGRDSQAMQTASLQRENMAYLRGFHLPESLVVT 59
           M I+ILGAG WGTALAI LA +HQV LWGR++QAMQ A  QREN  YL GF LPE L VT
Sbjct: 1   MKITILGAGAWGTALAIPLAHKHQVTLWGRNAQAMQAADRQRENSLYLPGFPLPEGLAVT 60

Query: 60  ADFARTVDHVTS-CQDSLLIVASSVSGLRALAEMLRDHPIPNIVWLCKGLEEQTRLLPHQ 118
           ADF   V HV     DSLLI ASSVSGLR LA  LR +PIPN+VWLCKGLEE TRLLPHQ
Sbjct: 61  ADFDAAVRHVCDDPADSLLIAASSVSGLRELAGQLRAYPIPNLVWLCKGLEEGTRLLPHQ 120

Query: 119 IVREVLGDKIPASALSGPSFAQEVARGLPCALTIASHDKALCERVVGAVHGGNLRVYSSD 178
           +V+EVLG ++ A ALSGPSFAQEVARGLPCALTIA  D ALCERVV AVHG N+R+YSSD
Sbjct: 121 VVQEVLGPQLAAGALSGPSFAQEVARGLPCALTIAGADAALCERVVAAVHGNNIRIYSSD 180

Query: 179 DLIGVEIGGAVKNILAIATGAADGL 203
           DLIGVEIGGAVKNILAIATG ADGL
Sbjct: 181 DLIGVEIGGAVKNILAIATGVADGL 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,262,326
Number of extensions: 52944
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)