BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0052.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309502|ref|YP_003773594.1| preprotein translocase subunit ...   264   2e-72

>gi|300309502|ref|YP_003773594.1| preprotein translocase subunit
           SecB protein [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  264 bits (675), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/138 (90%), Positives = 137/138 (99%)

Query: 1   MAEENQQAEQQPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPAIEVAVDVGAEALADGIFE 60
           M+E+NQ+A+QQPVFQIQRVYLKDLSLEQPNSPAIFLEQ+AP+IEV+VDVGAEALA+G+FE
Sbjct: 1   MSEQNQEAQQQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFE 60

Query: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEVRNIPAEQLDPLLGIGCPNIIYPYLRANIADV 120
           STVTITVTAKVKDKVAFLVEGKQAGIFE+RN+PAEQLDPLLGIGCPNIIYPYLRANIAD 
Sbjct: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADA 120

Query: 121 ITRAGFPPIHLAEINFEV 138
           ITRAGFPP+HLAEINFEV
Sbjct: 121 ITRAGFPPVHLAEINFEV 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 432,478
Number of extensions: 16599
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)