BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0048.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase...   350   1e-97

>gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  350 bits (897), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/317 (65%), Positives = 237/317 (74%), Gaps = 32/317 (10%)

Query: 10  ITERAKQKQVAEKERADLQQKLANLKRDIDKTETAKGNAADALAESEQAISKANRSLREL 69
           ITERA+QKQ AEKERADLQQ+LANLKRDID TETAK NAADALA SEQAISKANRSLR+L
Sbjct: 27  ITERARQKQAAEKERADLQQRLANLKRDIDHTETAKDNAADALAASEQAISKANRSLRDL 86

Query: 70  SQEQAGTEAKLNVLVKQQAELSGVVNSQQAQLSKLLRDQYVAGNEDRIKLLLSGDNPNRI 129
           +QEQ  TEA+LN L++Q  EL+ +VN+QQAQLSKLLR+QYVAGNEDRIKLLLSGDNPNRI
Sbjct: 87  AQEQQQTEARLNQLIRQLNELTALVNAQQAQLSKLLREQYVAGNEDRIKLLLSGDNPNRI 146

Query: 130 NRELQYMGYVSQAQAKLIETLRVNLQAIKDNKAATQNAKFELEEIAQEENEQKKLLEKEK 189
           NRELQYMGYVSQAQAKLIETLR N QAI+ NKA TQNAKFELEEIAQEE EQKK+LE+EK
Sbjct: 147 NRELQYMGYVSQAQAKLIETLRANQQAIRANKADTQNAKFELEEIAQEELEQKKVLEREK 206

Query: 190 AKRGTLLAQLSTKLNSQRKEVGNLQRDEQRLXG------------------EDEKRRQEQ 231
            +R TLL+QLSTKLN+QR+E G +++D+QRL                      EKRRQEQ
Sbjct: 207 GRRQTLLSQLSTKLNAQRQEAGRIEQDQQRLSSLVDKLAQIIEQQKKAEAEAREKRRQEQ 266

Query: 232 LAKAKAEHERRAA-------AAQQAKAAPGTKVKPAP-----SDTIDDDEAPQ--SLGRN 277
           LAKAKAE E+R A             A    + KPAP     +D IDDDE PQ  SLGRN
Sbjct: 267 LAKAKAEREKRLAEQRARAEKRAAEAAKAAKEGKPAPKMPDPADAIDDDEPPQQASLGRN 326

Query: 278 EATPSPEXANRSPACAA 294
           +  P P+  N     A+
Sbjct: 327 DTVPEPQPDNFGKPFAS 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.306    0.121    0.311 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 583,287
Number of extensions: 17055
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 130 (54.7 bits)