BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0047.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase...   222   8e-60
gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillu...    74   3e-15
gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein [Her...    71   2e-14
gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptid...    58   2e-10

>gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  222 bits (565), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 100/119 (84%), Positives = 112/119 (94%)

Query: 1   VRGDLIAKFGGKRGDGPSWKGLFIRTPEGSEVRAVAAGRVVYADWLRGFGNLLIIDHGNQ 60
           V+GDL+AKFG +RGDGP+ +GLFIR  EG+EVRAVAAGRVV+ADWLRGFGNL+I+DHGNQ
Sbjct: 352 VKGDLMAKFGSRRGDGPTSRGLFIRAHEGAEVRAVAAGRVVFADWLRGFGNLIIVDHGNQ 411

Query: 61  YMTIYGNNQSVLKRAGDLVKTGDVIASAGNSGGNEQSGLYFEMRHQGRAFDPLGWVTTR 119
           YMTIYGNNQSVLKRAGDLVK GD IA+AGNSGGNEQSGLYFEMR+QGRAFDP GWVT+R
Sbjct: 412 YMTIYGNNQSVLKRAGDLVKAGDTIATAGNSGGNEQSGLYFEMRYQGRAFDPQGWVTSR 470


>gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 254

 Score = 73.9 bits (180), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 2/101 (1%)

Query: 20  KGLFIRTPEGSEVRAVAAGRVVYA-DWLRGFGNLLIIDHGNQYMTIYGNNQSVLKRAGDL 78
           KG+ I   EG  V A AAG+V YA   +RG+GN++II H  Q +++Y +N+++L + G  
Sbjct: 155 KGIDIIGSEGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNKTILVKEGQT 214

Query: 79  VKTGDVIASAGNSGGNEQSGLYFEMRHQGRAFDPLGWVTTR 119
           V  G  IA+ GNS  N+   LYFE+R  G+  + +  +  R
Sbjct: 215 VTRGQQIATMGNSDTNKVK-LYFEIRRNGKPINVMAVLPAR 254


>gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 332

 Score = 71.2 bits (173), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 20  KGLFIRTPEGSEVRAVAAGRVVYA-DWLRGFGNLLIIDHGNQYMTIYGNNQSVLKRAGDL 78
           KG+ I    G  V A  AG+V+YA   +RG+GNL+II H +  ++ Y +NQ++L + G  
Sbjct: 233 KGVDIAGKAGQAVLAAGAGKVMYAGSGIRGYGNLVIIKHTSNLLSAYAHNQTILVKEGQS 292

Query: 79  VKTGDVIASAGNSGGNEQSGLYFEMRHQGRAFDPLGWVTTR 119
           V  G  IA  G S  ++   L+FE+R QG+  DP  ++  R
Sbjct: 293 VTKGQKIAEMGKS-DSDTVKLHFEIRQQGKPVDPSKYLPPR 332


>gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 59/98 (60%)

Query: 20  KGLFIRTPEGSEVRAVAAGRVVYADWLRGFGNLLIIDHGNQYMTIYGNNQSVLKRAGDLV 79
           +GL    P G+ + A AAG V+ +++   FGN+L IDHGN  +T Y +   +  + GD+V
Sbjct: 209 EGLDFPAPVGTRIVAAAAGVVIASEYHYQFGNMLEIDHGNNIITRYAHASRLFVKVGDIV 268

Query: 80  KTGDVIASAGNSGGNEQSGLYFEMRHQGRAFDPLGWVT 117
           K G  +A  G++G +  + L+FE+R +G A DP  ++ 
Sbjct: 269 KRGQHVADVGSTGRSTGAHLHFEVRIRGIAQDPRKFLA 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 405,567
Number of extensions: 14546
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 4
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)