BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0046.p
         (471 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309507|ref|YP_003773599.1| carboxy-terminal processing pro...   828   0.0  

>gi|300309507|ref|YP_003773599.1| carboxy-terminal processing
           protease transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 498

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/482 (85%), Positives = 440/482 (91%), Gaps = 14/482 (2%)

Query: 1   MIAGVAASMQFDAIAQKNATAPLPLEELRQLTDVFGLIKSDYVEPVEDKKLLTEAISGMV 60
           M+AG  A +QFDAIAQKNATA LPLEELRQ+ DVFGLIKSDYVE V+DKKLLTEAISGMV
Sbjct: 15  MVAGATAMIQFDAIAQKNATASLPLEELRQMADVFGLIKSDYVEQVDDKKLLTEAISGMV 74

Query: 61  ASLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPIEDSPAYRAGIKAGD 120
           +SLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPIEDSPA+RAGIKAGD
Sbjct: 75  SSLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPIEDSPAFRAGIKAGD 134

Query: 121 LITRLDATPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIILSITRQEIRVQSVKSK 180
           LITRLD+TPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIIL+ITRQEIRVQSVKSK
Sbjct: 135 LITRLDSTPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIILTITRQEIRVQSVKSK 194

Query: 181 VVEPGYAWLRVTQFQEPTVDDMAKKILAIYAQEPNLKGLVLDLRNDPGGVLPGAIGVSAT 240
           VVEPGYAWLRVTQFQEPTVDDM+KK+ AIYAQEPNLKG+VLDLRNDPGGVLPGAIGV+A 
Sbjct: 195 VVEPGYAWLRVTQFQEPTVDDMSKKLAAIYAQEPNLKGIVLDLRNDPGGVLPGAIGVAAA 254

Query: 241 FLPKDAVVVTTNGQLPSSKSSFLAKREFYASNPLNDPLSRLPDAIKKVPLVVLINSGSAS 300
           FLPKD+VVV+TNGQLPSSK +F AKRE+YASNPL+DPLSRLPDAIKKVP+VVLINSGSAS
Sbjct: 255 FLPKDSVVVSTNGQLPSSKQTFYAKREYYASNPLSDPLSRLPDAIKKVPMVVLINSGSAS 314

Query: 301 ASEIVAGALQDYKRATIMGTQSFGKGS-------------XVKLTTARYYTPNGRSIQAR 347
           ASEIVAGALQDYKRATIMGTQSFGKGS              VKLTTARYYTP GRSIQAR
Sbjct: 315 ASEIVAGALQDYKRATIMGTQSFGKGSVQSVIALPPEKNTAVKLTTARYYTPKGRSIQAR 374

Query: 348 GIVPDIMVDEYADGDGLNGLRLREADLTKHLTNDKDKDAKEVKASTVDEKEEERLIAQEK 407
           GIVPDIMVDEY DGDGLNGLRLREADL+KHLTND DK A EVKA ++DE+ EERLIA EK
Sbjct: 375 GIVPDIMVDEYPDGDGLNGLRLREADLSKHLTNDTDKSA-EVKAKSMDEQSEERLIAAEK 433

Query: 408 KRKPLEFGSKDDFQLAQALNHLKGQPVQVSKVKPEIRDESSKDDKPVKDIRKDNKAPPEK 467
           KRKP++FGSKDDFQL QALN LKG PV+VS  KPE+R+E  K+D PVKD RKDNKAP EK
Sbjct: 434 KRKPMDFGSKDDFQLMQALNQLKGLPVKVSNAKPEVRNEEGKNDTPVKDERKDNKAPAEK 493

Query: 468 IE 469
           I+
Sbjct: 494 ID 495


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,434,141
Number of extensions: 61225
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,198,455
Effective search space: 457809810
Effective search space used: 457809810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 132 (55.5 bits)