BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0045.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme p...   325   1e-90

>gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  325 bits (833), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 158/206 (76%), Positives = 175/206 (84%)

Query: 1   MYLASAGMGRITLVDDDTVDLTNLQRQIMHTTGRVGQLKVRSGQQALQEINPEIDIVAIA 60
           MYLASAG+GRITLVD DTVDLTNLQRQIMHTT RVGQ KV SG+QAL++INP + + A+A
Sbjct: 45  MYLASAGVGRITLVDHDTVDLTNLQRQIMHTTARVGQPKVESGRQALEQINPGVQVTALA 104

Query: 61  ERVSDARLGELVRSATVVLDCSDNFDTRHAVNRACVAHKVPLVSGAAIRFDGQISVFDPR 120
           ERV   RL  LV  A VVLDCSDNF TRHAVNRACVA  VPLVSGAAIRFDGQ+SVFDPR
Sbjct: 105 ERVEAERLHALVAQADVVLDCSDNFATRHAVNRACVAAGVPLVSGAAIRFDGQVSVFDPR 164

Query: 121 SGAAPCYACLFPPDQKFDEVQCSTMGVFSPLVGIIGTMQAAEALKLTAGIGESLAGRLQI 180
             A+PCYACLFPP+++F+EVQCSTMGVFSPLVGIIGTMQAAEA+KL AGIG SLAGRL I
Sbjct: 165 QDASPCYACLFPPEREFEEVQCSTMGVFSPLVGIIGTMQAAEAIKLLAGIGRSLAGRLLI 224

Query: 181 LDARNMEWTTIRLARNPACPVCGAAH 206
           LDAR MEWT+I + R+  CPVC   H
Sbjct: 225 LDAREMEWTSITVGRDRQCPVCAKRH 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 621,644
Number of extensions: 24598
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)