BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0044.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309510|ref|YP_003773602.1| DnaK suppressor protein [Herbas...   298   1e-82

>gi|300309510|ref|YP_003773602.1| DnaK suppressor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  298 bits (764), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/159 (93%), Positives = 154/159 (96%), Gaps = 1/159 (0%)

Query: 23  IEKPVVLKVSEVATKTPKTTPDTQTLLTEEQILKMGEKDYMNEAQLAFFKARLQQLERDL 82
           +EKPVVLKVSEVATKTPKTTP  Q LLTEE+ILKM EKDYMNEAQLAFFKARLQQLE+DL
Sbjct: 4   VEKPVVLKVSEVATKTPKTTPAAQ-LLTEEEILKMDEKDYMNEAQLAFFKARLQQLEKDL 62

Query: 83  LKNAGETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVSIDSGEYG 142
           LKNA ETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIV+ID+GEYG
Sbjct: 63  LKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVAIDNGEYG 122

Query: 143 WCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 181
           WCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD
Sbjct: 123 WCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 389,541
Number of extensions: 13635
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)