BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0043.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309511|ref|YP_003773603.1| hypothetical protein Hsero_0169...    98   3e-22

>gi|300309511|ref|YP_003773603.1| hypothetical protein Hsero_0169
           [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score = 98.2 bits (243), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 78/143 (54%), Gaps = 17/143 (11%)

Query: 20  RRRRSGHM-GLALALAVMLLFSQWLGLLHGIAHAGWPEQASASPVASFNAALFNYVDDD- 77
            R R  H   L   LA+ LL +Q LG +HGIAHAGW   A  +  +  + ALF+  + D 
Sbjct: 5   HRLRCLHTPALVAILAMSLLLAQMLGFVHGIAHAGW---APGTVHSLISDALFDEGEGDD 61

Query: 78  ----------ADVNADDGKLPAAHGKPHHSCAEYDAAAGAAGIHARFFSPPLIPGTQVLA 127
                          D   + A H   HHSC  YDAAA +AG H  F   PL+P  +VLA
Sbjct: 62  HAASAHVHGGQQQGEDHAHVHADHS--HHSCVSYDAAALSAGAHFDFPPLPLMPPVRVLA 119

Query: 128 LWQAFASWDAPAVCHFSSRAPPR 150
           LWQAFASWD P  CHFSSRAPPR
Sbjct: 120 LWQAFASWDPPLNCHFSSRAPPR 142


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 445,816
Number of extensions: 14288
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)