BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0041.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin ...   389   e-109

>gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 690

 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/238 (77%), Positives = 207/238 (86%)

Query: 177 FSXSVAQRAPTVEELYSNGPHESTSTFDIGNSSLQKETSHNIELSLQKTEGLVRWKGNLF 236
            + S+AQRAPTVEELYSNGPHESTSTFDIG+S L+KETSHNIELSLQKTEGLVRWKGNLF
Sbjct: 453 LTYSLAQRAPTVEELYSNGPHESTSTFDIGSSQLKKETSHNIELSLQKTEGLVRWKGNLF 512

Query: 237 QNKVKNYVYGRTNGQVDDAGNADPAGEFLQRFWSQGDATIHGAEVEVSYNLNNEGFSVRG 296
           +NKV NY+YGRTNGQVDD+G ADP GEF QRFWSQ DA I GAE EVSYN N EG S R 
Sbjct: 513 RNKVNNYIYGRTNGQVDDSGAADPNGEFTQRFWSQADAAIRGAEAEVSYNWNGEGMSGRL 572

Query: 297 FADTSRGKLDNQGNLPLQPATRYGVDLGWRQGPWASGVRVLRALKQDRLASFESSQTPSY 356
           FADTSRG LDN GN+PLQPATRYGV+LG++ GPWASG++VLRA +QDRLASFE+  TPSY
Sbjct: 573 FADTSRGTLDNLGNIPLQPATRYGVELGYKTGPWASGMKVLRAQRQDRLASFETYATPSY 632

Query: 357 TQLDANLSYTQKLQTMRVTWFALVKNLLNQDIRYSTAVLKDTVPQAGRNLIVGVRTQF 414
           TQ+DANLSYTQKL  +++TWFAL +NLLNQDIR ST+VL++TVP  GRN IVG RT F
Sbjct: 633 TQVDANLSYTQKLNGVKLTWFALARNLLNQDIRLSTSVLRETVPMGGRNFIVGARTSF 690



 Score =  308 bits (790), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 140/183 (76%), Positives = 162/183 (88%)

Query: 1   LYGSGAIGGLVNVVNDRIPTELVGKPTGQVEARYGTADGQKNTSFSVDGSAGQIGLHVDG 60
           LYGSGAIGGLVNVVNDRIPTELVGKPTG VE RYGT DG+KNTSFS+D SAGQIGLH+DG
Sbjct: 166 LYGSGAIGGLVNVVNDRIPTELVGKPTGTVEGRYGTVDGEKNTSFSLDTSAGQIGLHLDG 225

Query: 61  NYRDTDNYKIPGNARQGDATSASGRLPNSFTHESSVGVGGSYIADWGHIGASVSSLDDHY 120
           NYRDT +YKIPGNARQGD ++ASGRLPNSFTHESSVG+G SY+++WG++G S ++LDDHY
Sbjct: 226 NYRDTSDYKIPGNARQGDGSTASGRLPNSFTHESSVGLGASYVSNWGYVGVSAATLDDHY 285

Query: 121 GIPTAEKSFIDLHQTRYDIDSLVKEPFAGIESFKFKLGYTDYTHTEKKKDGTADTVFSXS 180
           GIPT+E SFIDLHQ RYDID++V +PFAGIE  + +LGYTDYTH EK++DGT DTVFS  
Sbjct: 286 GIPTSELSFIDLHQNRYDIDTVVNQPFAGIEKLRMRLGYTDYTHIEKQRDGTPDTVFSNR 345

Query: 181 VAQ 183
             Q
Sbjct: 346 AVQ 348


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,358,819
Number of extensions: 59005
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)