BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0039.p
         (64 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t...    78   1e-16

>gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 378

 Score = 77.8 bits (190), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 46/64 (71%)

Query: 1   VLLLWQAMKSANSPDPRVFAPVLARMRYKGVTATYEFNPRHDMTESTVTILRFKDGKLTP 60
           ++L+ QAMK ANS DP+ F P LA++ YKGV   Y+F+  HD+ +S VT+ RFKDG   P
Sbjct: 315 MMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQSPVTVYRFKDGLPVP 374

Query: 61  LSSF 64
           L+S+
Sbjct: 375 LTSY 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 203,333
Number of extensions: 5775
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 64
Length of database: 1,619,870
Length adjustment: 36
Effective length of query: 28
Effective length of database: 1,449,410
Effective search space: 40583480
Effective search space used: 40583480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)