BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0036.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309517|ref|YP_003773609.1| proline racemase [Herbaspirillu...   233   5e-63

>gi|300309517|ref|YP_003773609.1| proline racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 336

 Score =  233 bits (595), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 108/123 (87%), Positives = 115/123 (93%)

Query: 19  MLSYTRTVQTIDAHTGGEPLRILVSGLPQVPGATILEKRTWLKENRDDLRQFLMNEPRGH 78
           MLSYTRTVQTIDAHTGGEPLRI+VSGLP++P  TILE+R WL+E+RDDLR FLMNEPRGH
Sbjct: 1   MLSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRCFLMNEPRGH 60

Query: 79  ADMYGAYLFPPLTPNADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPVTRICF 138
           ADMYGAYL PP+T  ADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSP TRICF
Sbjct: 61  ADMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPQTRICF 120

Query: 139 DAP 141
           DAP
Sbjct: 121 DAP 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 590,708
Number of extensions: 24777
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)