BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0035.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309517|ref|YP_003773609.1| proline racemase [Herbaspirillu...   251   8e-68
gi|300310519|ref|YP_003774611.1| 4-hydroxy-3-methylbut-2-enyl di...   202   4e-53

>gi|300309517|ref|YP_003773609.1| proline racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 336

 Score =  251 bits (640), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 132/152 (86%), Gaps = 3/152 (1%)

Query: 38  GRKLVDGRRISRRRPGR---FXAPAGFIDASVEWDGQRAGKVTFKNVPSFIYQRDVEVDT 94
           G+ LV+   + R  P     F APAGFI+A VEWDG+RAGKV+F NVP+FIY+RDVEVDT
Sbjct: 100 GKVLVEMGYVERTSPQTRICFDAPAGFIEAFVEWDGERAGKVSFNNVPAFIYRRDVEVDT 159

Query: 95  PSFGKITGDIVFGGAFYYYINADQAGLTVKPELVRQLIQLGAETKAAVKAKVQIRHPLEP 154
           P FGKITGDIVFGGAFYYYINA QAGLTVKPELVRQLIQLGAETKAAV AKV I HPLEP
Sbjct: 160 PGFGKITGDIVFGGAFYYYINATQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEP 219

Query: 155 GLNTLYGTIIDSAPNFPGADQSNVCIFADREV 186
           GLNTLYGTIIDSAPNFPGADQSNVCIFADREV
Sbjct: 220 GLNTLYGTIIDSAPNFPGADQSNVCIFADREV 251


>gi|300310519|ref|YP_003774611.1| 4-hydroxy-3-methylbut-2-enyl
           diphosphate reductase [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  202 bits (513), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 111/121 (91%), Gaps = 1/121 (0%)

Query: 197 EKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLREVAEKKGVPAYMVDNAELI 256
           +KGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLRE+AEKKGV A+MVDNA LI
Sbjct: 196 KKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLRELAEKKGVAAFMVDNAALI 255

Query: 257 RQEWLDGKRRVGVTAGASAPEVLVQAVIDRIKEGSLRSVRILEGIEEHVTFPMPKGLSGS 316
              W+ G++R+GVTAGASAPEVLVQAVIDRIKE   RSVR+LEGIEE+VTFP+PKGL G+
Sbjct: 256 DPLWIQGRQRIGVTAGASAPEVLVQAVIDRIKEIGARSVRVLEGIEENVTFPLPKGL-GT 314

Query: 317 R 317
           R
Sbjct: 315 R 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 995,236
Number of extensions: 39699
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)