BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0033.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309518|ref|YP_003773610.1| ornithine cyclodeaminase [Herba...   427   e-121
gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase [Herba...    57   2e-09

>gi|300309518|ref|YP_003773610.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  427 bits (1097), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/309 (73%), Positives = 253/309 (81%), Gaps = 2/309 (0%)

Query: 1   MHILDAQQTADALPYDRLVPALAQAAQEFADGRITAPERQVVPIDANSVLLSMPAVSADL 60
           MHILD +QTA ALPY  LV ALA+A QE ADGRI APERQVVPIDA SVLL MPA++ DL
Sbjct: 1   MHILDPRQTAQALPYAALVDALARATQELADGRIRAPERQVVPIDAASVLLGMPAIADDL 60

Query: 61  SVTKLITVHGNNAQHGLPAIQGEVIVFETQTGRRIALLHGPTVTARRTAAMTLLGIQTLA 120
           SVTKLITVH +NA+H LPAIQGEVI FETQTGRR+AL+ GPTVTARRTAAM++LGI+TL 
Sbjct: 61  SVTKLITVHADNARHQLPAIQGEVIAFETQTGRRLALMDGPTVTARRTAAMSMLGIRTLL 120

Query: 121 PAKPKSALLIGTGVQAAAHADALVEFFGVTQFWIVARDVSRMQAFCSELSTRHDGIVASP 180
           P +P+SALLIGTGVQ+AAHADALVEFFGV QFWIVARD++R QAFC  LS RH   VASP
Sbjct: 121 PRQPQSALLIGTGVQSAAHADALVEFFGVRQFWIVARDLARTQAFCRALSERHPQAVASP 180

Query: 181 LAADAMQKDVPATDVLIALTTSRTAVIPARLAPQTLAIGVGAFKPDMVEFPAALLAERTI 240
           L A  +Q+D+P TDV+IALTTSR+AVIP  +A  TLAIGVGAFKPDMVEFPA+LL  R I
Sbjct: 181 LPAQMLQQDLPHTDVVIALTTSRSAVIPEHIAADTLAIGVGAFKPDMVEFPASLLHARRI 240

Query: 241 VVDDLGGAKHEAGDLIQAGVDWSRVRAIGDIL--AGRGEKLQPSQGLPVFKTVGQASWDL 298
           VVDDL GA HEAGDLIQAGVDWS V AI D++        L     LPVFKTVGQA+WDL
Sbjct: 241 VVDDLAGAHHEAGDLIQAGVDWSGVVAIADVVAGRAPAAALASGAALPVFKTVGQAAWDL 300

Query: 299 AAARVARXT 307
           AAARV R T
Sbjct: 301 AAARVMRAT 309


>gi|300313853|ref|YP_003777945.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 27/270 (10%)

Query: 46  ANSVLLSMPAVSADLSVTKLITVHGNNAQHGLPAIQGE----VIVFETQTGRRIALLHGP 101
           +N V+LSM        +  +I   G         I+G+    + +F T+TG  +  + G 
Sbjct: 43  SNGVMLSM--------MGAVIPAAGIAGAKVYTTIKGQFRFVIQLFSTETGAPLCTMEGD 94

Query: 102 TVTARRTAAMTLLGIQTLAPAKPKSALL--IGTGVQAAAHADALVEFFGVTQFWIVARDV 159
            +T  RTAA T +    LA  +P + +L  IGTGVQA +H  AL++     +  I  R  
Sbjct: 95  AMTGLRTAAATAVACDALA--RPDAGVLAVIGTGVQARSHIPALLQVRPFKEVLIAGR-- 150

Query: 160 SRMQAFCSELSTRHDGIVASPLAADAMQKDVPATDVLIALTTSRTAVIPAR-LAPQTLAI 218
           S  QA   E+ TR  G+ A  ++ D   +     DVL+ +T S T +     L P     
Sbjct: 151 SGQQALAEEV-TRTLGVPARMVSID---EAAAQADVLVTVTRSATPLFDGELLRPGAFVA 206

Query: 219 GVGAFKPDMVEF-PAALLAERTIVVDDLGGAKHEAGDLIQAG---VDWSRVRAIGDILAG 274
            VGA K ++ E    A+     + V+    A+ EAGDL+Q      DW++V  +   + G
Sbjct: 207 AVGASKANVRELDDTAIGRAAALFVEWKPQAQQEAGDLVQCAPGVFDWAQVMELAQAVDG 266

Query: 275 RGEKLQPSQGLPVFKTVGQASWDLAAARVA 304
                +    + ++K +G    D+A A +A
Sbjct: 267 SMPYQRRPDDIVIYKGIGIGLEDVALAGLA 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,004
Number of extensions: 43995
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)