BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0148.0029.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 489 e-140 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 488 e-139 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 256 1e-69 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 240 1e-64 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 223 8e-60 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 489 bits (1259), Expect = e-140, Method: Compositional matrix adjust. Identities = 235/254 (92%), Positives = 248/254 (97%) Query: 3 TSTLLKIADVSKRFGGLQALSGVSLTIEQGQIYGLIGPNGAGKTTFFNVITGLYQPDTGS 62 + TLLKI DVSKRFGGLQAL+GV +TIE+GQIYGLIGPNGAGKTTFFNVITGLYQPDTG+ Sbjct: 2 SQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGT 61 Query: 63 FELAGKPYSPSAPHEVAKAGIARTFQNIRLFGDMTVLENVMVGCHVRTKQNVFGAVFRHK 122 FEL GKPYSPSAPHEVAKAGIARTFQNIRLFG+MTVLENVMVGCHVRTKQNVFGAVFRHK Sbjct: 62 FELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHK 121 Query: 123 AARDEEAAIKDKSQKLLDFVGIGKFASRTARHLSYGDQRRLEIARALATEPQLLALDEPA 182 AAR+EEAAI++KSQKLLDFVGIG+FA RTARHLSYGDQRRLEIARALAT+PQLLALDEPA Sbjct: 122 AAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPA 181 Query: 183 AGMNATEKIGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRLTVLDYGKPIAEGVPADVQ 242 AGMNATEK+GLRELLVKIQAEGKTILLIEHDVKLMMGLCNR+TVLDYGKPIAEGVPADVQ Sbjct: 182 AGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQ 241 Query: 243 KNPAVIEAYLGASH 256 KNPAVIEAYLGA H Sbjct: 242 KNPAVIEAYLGAGH 255 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 488 bits (1256), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/254 (92%), Positives = 248/254 (97%) Query: 3 TSTLLKIADVSKRFGGLQALSGVSLTIEQGQIYGLIGPNGAGKTTFFNVITGLYQPDTGS 62 + TLLKI DVSKRFGGLQAL+GV +TIE+GQIYGLIGPNGAGKTTFFNVITGLYQPDTG+ Sbjct: 2 SQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGT 61 Query: 63 FELAGKPYSPSAPHEVAKAGIARTFQNIRLFGDMTVLENVMVGCHVRTKQNVFGAVFRHK 122 FEL GKPYSPSAPHEVAKAGIARTFQNIRLFG+MTVLENVMVGCHVRT+QNVFGAVFRHK Sbjct: 62 FELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHK 121 Query: 123 AARDEEAAIKDKSQKLLDFVGIGKFASRTARHLSYGDQRRLEIARALATEPQLLALDEPA 182 AAR+EEAAI++KSQKLLDFVGIG+FA RTARHLSYGDQRRLEIARALAT+PQLLALDEPA Sbjct: 122 AAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPA 181 Query: 183 AGMNATEKIGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRLTVLDYGKPIAEGVPADVQ 242 AGMNATEK+GLRELLVKIQAEGKTILLIEHDVKLMMGLCNR+TVLDYGKPIAEGVPADVQ Sbjct: 182 AGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQ 241 Query: 243 KNPAVIEAYLGASH 256 KNPAVIEAYLGA H Sbjct: 242 KNPAVIEAYLGAGH 255 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 256 bits (654), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/248 (50%), Positives = 167/248 (67%) Query: 6 LLKIADVSKRFGGLQALSGVSLTIEQGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSFEL 65 LL++ D+SK FGGLQ L GV+ + QG+I+GLIGPNGAGKTT FN+ITGL + +GS Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 66 AGKPYSPSAPHEVAKAGIARTFQNIRLFGDMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 125 APH++ + GIARTFQNIR+F +MT+LENV+VG H V + R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 126 DEEAAIKDKSQKLLDFVGIGKFASRTARHLSYGDQRRLEIARALATEPQLLALDEPAAGM 185 + E ++++ +LL +V + A A LSYG+QR+LE ARALAT+P+LL LDEP AGM Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 186 NATEKIGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRLTVLDYGKPIAEGVPADVQKNP 245 N EK L +V I+ G TI +IEHD++ +MGLC R+ VL++GK IAEG P ++ N Sbjct: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 Query: 246 AVIEAYLG 253 VIEAYLG Sbjct: 242 EVIEAYLG 249 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 240 bits (612), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/253 (45%), Positives = 171/253 (67%), Gaps = 1/253 (0%) Query: 2 STSTLLKIADVSKRFGGLQALSGVSLTIEQGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 61 S T+L+++++S RFGGL A+ GVSL +++ +++ +IGPNGAGKTT FN I+G Y+P +G Sbjct: 4 SVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSG 63 Query: 62 SFELAGKPYSPSAPHEVAKAGIARTFQNIRLFGDMTVLENVMVGCHVRTKQNVFGAVFRH 121 L G + H+VA+ G+ RTFQNIRLF MTV+EN++V H + N+ + + Sbjct: 64 EIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKT 123 Query: 122 KAARDEEAAIKDKSQKLLDFVGIGKFASRTARHLSYGDQRRLEIARALATEPQLLALDEP 181 A R E ++ LD +G+ A+R A LSYG QRR+EIAR + T+P+LL LDEP Sbjct: 124 PAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEP 183 Query: 182 AAGMNATEKIGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRLTVLDYGKPIAEGVPAD 240 AAG+N EK L +L+ +++ E G +LLIEHD+ L+MG+ +R+ V+++GKPI G P Sbjct: 184 AAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQ 243 Query: 241 VQKNPAVIEAYLG 253 V+ + VI+AYLG Sbjct: 244 VRSDERVIKAYLG 256 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 223 bits (569), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 115/251 (45%), Positives = 167/251 (66%), Gaps = 2/251 (0%) Query: 5 TLLKIADVSKRFGGLQALSGVSLTIEQGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSFE 64 +L + V+++FGGL A + +SL + G++ LIGPNGAGK+T FN I+G+ P +GS + Sbjct: 354 VVLDVRSVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQ 413 Query: 65 LAGKPYSPSAPHEVAKAGIARTFQNIRLFGDMTVLENVMVGCHVRTKQNVFGAVFRHKAA 124 G+ + +A G++R+FQ++RL MTVLENV +G ++R ++ V ++ R Sbjct: 414 FRGQEVTGRGSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLD-- 471 Query: 125 RDEEAAIKDKSQKLLDFVGIGKFASRTARHLSYGDQRRLEIARALATEPQLLALDEPAAG 184 R EEA I ++ + ++ VG+ A LS G QR LEIARALA +P LL LDEPAAG Sbjct: 472 RKEEARILAEAARQIERVGLKAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAG 531 Query: 185 MNATEKIGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRLTVLDYGKPIAEGVPADVQKN 244 + EK L ELL K++ EG ILL+EHD+ +M L +R+ V+D+G+ IAEG+PAD+Q N Sbjct: 532 LRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPADIQNN 591 Query: 245 PAVIEAYLGAS 255 PAV+EAYLG + Sbjct: 592 PAVLEAYLGVA 602 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 799,286 Number of extensions: 34130 Number of successful extensions: 526 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 143 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)