BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0021.p
         (98 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310527|ref|YP_003774619.1| transmembrane protein [Herbaspi...   131   9e-33
gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391...    86   8e-19

>gi|300310527|ref|YP_003774619.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  131 bits (330), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 79/98 (80%)

Query: 1   LRTVRSDVQVLLQEAQELFTEAAATTGKKAEDLRAKGEEILDRAFIKAQGIQSYVVQTGK 60
            +TVR+DVQ LLQ+AQ++F EAA  TGKKA+DLRA  +E+L++A   AQ  Q+ VV TG+
Sbjct: 46  FKTVRTDVQSLLQQAQDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAVVDTGR 105

Query: 61  EIVSTTDDYVQSNPWRAIAISTGLGLLLGLCVSRTGER 98
           +IV+TTDDYVQSNPWRAIAI TG+GLL+GL V R  +R
Sbjct: 106 QIVTTTDDYVQSNPWRAIAIGTGIGLLVGLAVGRCADR 143


>gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391
           [Herbaspirillum seropedicae SmR1]
          Length = 102

 Score = 85.5 bits (210), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 73/95 (76%)

Query: 1   LRTVRSDVQVLLQEAQELFTEAAATTGKKAEDLRAKGEEILDRAFIKAQGIQSYVVQTGK 60
           L+TVR+D++ L+++AQ LF EAAA TG+KA++LRA+G  +L+ A   AQ  Q+  ++ GK
Sbjct: 7   LKTVRNDMKTLVKDAQALFAEAAAATGEKADELRARGLTLLEAAAEAAQSAQAAAIEKGK 66

Query: 61  EIVSTTDDYVQSNPWRAIAISTGLGLLLGLCVSRT 95
           E+ + TDDYV  NPWRA+AIS GLGLL+GL + R+
Sbjct: 67  EVAAKTDDYVHENPWRAVAISAGLGLLVGLVIGRS 101


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 225,863
Number of extensions: 6799
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 1,619,870
Length adjustment: 67
Effective length of query: 31
Effective length of database: 1,302,625
Effective search space: 40381375
Effective search space used: 40381375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)