BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0017.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310531|ref|YP_003774623.1| periplasmic or secreted lipopro...   182   4e-48
gi|300314015|ref|YP_003778107.1| hyperosmotically inducible peri...    66   7e-13

>gi|300310531|ref|YP_003774623.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 109

 Score =  182 bits (462), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/103 (86%), Positives = 95/103 (92%)

Query: 3   LSLTKRITGFFLALMMVSLVGCASGPNKEGTGEYVDDAVITTKVKTAILQEPNLKATEIN 62
           +SLTKR  GFFLAL MVSLVGCASGPNKEGTGEYVDDAVITTKVK AI  E +LK+TEIN
Sbjct: 6   MSLTKRFIGFFLALFMVSLVGCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLKSTEIN 65

Query: 63  VETYKGVVQLSGFVSSATAASRATELARGVKGVTSVKNDLRLK 105
           VETYKGVVQLSGFVSS+TAA+RATELARGVKGV SV+NDLRLK
Sbjct: 66  VETYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRNDLRLK 108


>gi|300314015|ref|YP_003778107.1| hyperosmotically inducible
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 65.9 bits (159), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 47/72 (65%)

Query: 34  GEYVDDAVITTKVKTAILQEPNLKATEINVETYKGVVQLSGFVSSATAASRATELARGVK 93
           G Y+DD+VIT KVK A++++  + A +INV T  GVV L G V SA     A +L  G++
Sbjct: 39  GAYIDDSVITAKVKAALVEDKQVSAMKINVTTKDGVVTLKGSVPSAELGQHALQLVAGIE 98

Query: 94  GVTSVKNDLRLK 105
           GV  VK+DL +K
Sbjct: 99  GVRDVKSDLTVK 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 248,288
Number of extensions: 7751
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)