BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0148.0016.p (131 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 230 4e-62 gi|300312077|ref|YP_003776169.1| response regulator containing a... 119 6e-29 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 101 2e-23 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 84 4e-18 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 72 2e-14 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 230 bits (586), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/120 (92%), Positives = 118/120 (98%) Query: 6 MTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDK 65 MTKILVVDDHAVVRAGV HFI++IP+ME+GGEASTAEEAIRLVRTQ+WDIVLLDIAMPDK Sbjct: 1 MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60 Query: 66 SGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILR 125 SGVEVLKQIKREKP LPVLMLSMHPESRYAVQVLRSGASGYVQKEALAT+LV+AINTILR Sbjct: 61 SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 119 bits (299), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 52/118 (44%), Positives = 86/118 (72%) Query: 3 VKTMTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAM 62 V K+L+ DDHA+VR G++ A ++ V G A+ EAI+L R D++LLDI + Sbjct: 5 VTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVL 64 Query: 63 PDKSGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAI 120 PD++G+++LKQI++E+P LPVL+LS+H E +YA++ L++GA+G++ K+A +L++AI Sbjct: 65 PDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAI 122 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 101 bits (252), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 83/123 (67%), Gaps = 1/123 (0%) Query: 6 MTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDK 65 +T+I++ DDHA+VR+G++ + +P +EV GEAS E I ++ + D+VLLDIAM Sbjct: 2 LTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGM 61 Query: 66 SGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILR 125 +G+E L++++ E P + LMLSM+ Y +Q L +GA+GY+ K++ AT+L A+ + + Sbjct: 62 NGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEV-K 120 Query: 126 WGR 128 GR Sbjct: 121 HGR 123 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 84.0 bits (206), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 74/119 (62%) Query: 9 ILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDKSGV 68 I+++DDH +VR G++ + +P +EV EA A+EA+ QE D+ L+DI M +G+ Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 69 EVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILRWG 127 E+ P + VL+LSMH ++ Y +Q +++GA GYV K+A + D+V AI T+ G Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGG 132 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 66/113 (58%) Query: 8 KILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDKSG 67 +IL+VDDH + R+G++ + P+++V GEA + ++ D+VL+D+ MP SG Sbjct: 4 RILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLSG 63 Query: 68 VEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAI 120 +E ++ I ++ P VLMLS+ E+ L +GA GY+ K A LV +I Sbjct: 64 LEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSI 116 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 376,787 Number of extensions: 13091 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 17 Length of query: 131 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 56 Effective length of database: 1,264,745 Effective search space: 70825720 Effective search space used: 70825720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)