BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0013.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine ...   160   1e-40

>gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 677

 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/299 (43%), Positives = 189/299 (63%), Gaps = 4/299 (1%)

Query: 7   DIGESSSLEHYVATQANFASIISAAMSLAMIIALFGVVVLSSCYAEDGYRKILADLIAVQ 66
           DI  S+S+E++ A+ A+++S+ + AM LAM + L G+VVL +    + YR++L+ L+ ++
Sbjct: 14  DIQNSASVEYFAASHAHYSSMATLAMGLAMAVILLGLVVLLASLLGEEYRRLLSGLLEMR 73

Query: 67  GSSAAGFILSGVALYLQCLNVDKTSRKLALAARVLATLLLLLSAGFLLQNLFGVKLLHAA 126
             +A G IL   ALYL+C++    +R+  L  RV A L  +L A  L     G+      
Sbjct: 74  EMTAVGLILGASALYLRCIH--GGARRSGLR-RVAAGLSWMLLALGLGTLAHGLMYALGW 130

Query: 127 LPVLSMAGSAFGAEIHPLAAGCFLLTALILLLQELRIRGGHYPAEYLAFILIGLSAIPLV 186
           LP+           I PL +  F++ A +LLLQ+ R+ GG+YPAEYL+F LIGL+AIPLV
Sbjct: 131 LPI-DQNHPLSPLVIPPLLSLGFVVMAAVLLLQDWRMLGGYYPAEYLSFALIGLAAIPLV 189

Query: 187 GYLYGISKLTFLRYSTGIPLLTALGFLVLGAALLMARPSHRLMSIIIGHAPGGNMLRRLL 246
           GYLYG+S+  +L +   + LL+AL   +L  ALLMARP+H LM+II   APGG MLR LL
Sbjct: 190 GYLYGVSQFVYLDFPLPVSLLSALVMALLATALLMARPAHPLMAIITRIAPGGQMLRHLL 249

Query: 247 PSMLFLILLLNLLVAKGAERGLYSDQLMLPFLTLIDGALVVFVFWRFAGKLDREYGARA 305
           P  +FL+L  +LL+  G   G    +L+LP LTLI+G +V+F+FW  A +LD EYG R 
Sbjct: 250 PQTVFLLLAFSLLLNWGMTHGWILPELLLPTLTLINGVIVLFIFWGSASRLDSEYGERT 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 859,683
Number of extensions: 28425
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)