BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0006.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310540|ref|YP_003774632.1| nitrate transporter periplasmic...   619   e-178

>gi|300310540|ref|YP_003774632.1| nitrate transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  619 bits (1596), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/411 (75%), Positives = 331/411 (80%), Gaps = 54/411 (13%)

Query: 42  NEVDFKRRQLIQTAGLA-TGASMLGLATGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMA 100
            +VD KRR LIQ AGLA TGA  LGLA  GAWAAGSDKPEKEEVKIGFIPLTDCASVVMA
Sbjct: 5   EQVDGKRRTLIQGAGLAATGA--LGLAGRGAWAAGSDKPEKEEVKIGFIPLTDCASVVMA 62

Query: 101 SVLGFDKKYGIKIVLSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQMGIGGQKKDMAVL 160
           SVLG DKKYGIKI+ SKEASWAGVRDKLTNGELDAAHVLYGLIYGVQ+GIGGQKKDMAVL
Sbjct: 63  SVLGLDKKYGIKIIPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVL 122

Query: 161 MSLNNNGQAITLSKKIADKGGVDGQSLAKLMQTDKREYTFAQTFPTGTHAMWLYYWLAAN 220
           M LN+NGQAITLS+K+ADKG VDG SL KLMQTDKREYTFAQTFPTGTHAMWLYYWLAAN
Sbjct: 123 MGLNHNGQAITLSRKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAAN 182

Query: 221 GINPMKDAKVITX----------------------------------------------- 233
           GINPMKDAKVIT                                                
Sbjct: 183 GINPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDHP 242

Query: 234 ----GTTLDFAKKYPNTCRAMMAAVLEASKWIDASLANKNKMAEVIADKSYVNTSKDVID 289
               G++L+F KKYPNTCRAMMAA+LEASKWIDASL NKN+MAEVIADKSYVNTSKDVID
Sbjct: 243 EKVLGSSLEFVKKYPNTCRAMMAAILEASKWIDASLTNKNRMAEVIADKSYVNTSKDVID 302

Query: 290 QRIMGRYQNGLGKTWDDPNYMKFYNDGAVNFPYLSDGMWFMTQHRRWGLLKDDPDYLAVA 349
           QRI+GRYQNGLGKTWDDPNYMKFY DG VNFP+LSDGMWFMTQHRRWGLLK DPDYLAVA
Sbjct: 303 QRILGRYQNGLGKTWDDPNYMKFYEDGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVA 362

Query: 350 KAVNQIDLFKDAATMTKTSIPKDVMRTSKLMDGTVWDGKNPKAYAASFKVR 400
           KAVNQIDL+K AA MT T +PKD MR+S+LMDG VWDGKNP AYA SFK++
Sbjct: 363 KAVNQIDLYKQAAAMTGTPLPKDSMRSSRLMDGVVWDGKNPAAYAQSFKIK 413


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,194,839
Number of extensions: 45145
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)