BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0148.0003.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her...   200   2e-53
gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A...    85   1e-18
gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A...    77   4e-16
gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp...    71   2e-14
gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A...    69   6e-14

>gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  200 bits (508), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/105 (92%), Positives = 101/105 (96%)

Query: 1   MDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIG 60
           MDEPFGALDALTRAHLQDELLKIVAKT+STVVMVTHDVDEAVLLSDRIVMMTNGPAATIG
Sbjct: 168 MDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIG 227

Query: 61  EILEVKLARPRERVALAQDARYSEYRTAVLEFLYRKQAHPAREAA 105
           E+LEVKLARPR+RV LAQD  Y +YRTAVLEFLYRKQAHPAREAA
Sbjct: 228 EVLEVKLARPRDRVVLAQDPEYGQYRTAVLEFLYRKQAHPAREAA 272


>gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 84.7 bits (208), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 55/86 (63%)

Query: 1   MDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIG 60
           MDEPFGALDA TR  LQ EL +I   T  T+V VTHD+ EA+LL+DR+V MT GP A I 
Sbjct: 157 MDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIK 216

Query: 61  EILEVKLARPRERVALAQDARYSEYR 86
            I EV L  PR+    A  A Y+  R
Sbjct: 217 TIEEVHLPHPRDPADPACMALYARIR 242


>gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score = 76.6 bits (187), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 1   MDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIG 60
           MDEPFGALDALTR +LQDELL+I  +   T+V VTH ++EA+ L+DRIV+MT  P     
Sbjct: 164 MDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKR 223

Query: 61  EILEVKLARPRE 72
           ++L V L R R+
Sbjct: 224 DML-VNLPRLRD 234


>gi|300312621|ref|YP_003776713.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 70.9 bits (172), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 44/62 (70%)

Query: 1   MDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIG 60
           +DEPFGALDALTR  LQD L  ++ +   TVV+VTHDVDEA+ L+DRI + +  PA  + 
Sbjct: 153 LDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLK 212

Query: 61  EI 62
           E 
Sbjct: 213 EF 214


>gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score = 69.3 bits (168), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 5/84 (5%)

Query: 1   MDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIG 60
           MDEPF ALD  TR  +QDELL++ +    +VV VTHD++EA+ L+D++ ++T  P AT+ 
Sbjct: 177 MDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARP-ATLK 235

Query: 61  EILEVKLARPRERVALAQDARYSE 84
            +  + L RPR    + ++ RY +
Sbjct: 236 SVYPIDLPRPR----VMEEVRYEQ 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 291,478
Number of extensions: 9066
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 15
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 15
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)