BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0148.0002.p (326 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310291|ref|YP_003774383.1| LysR family transcription regul... 301 5e-83 gi|300313657|ref|YP_003777749.1| LysR family transcription regul... 100 2e-22 gi|300312482|ref|YP_003776574.1| LysR family transcription regul... 91 9e-20 gi|300310543|ref|YP_003774635.1| methyl-accepting chemotaxis pro... 87 2e-18 gi|300313689|ref|YP_003777781.1| LysR family transcription regul... 76 4e-15 >gi|300310291|ref|YP_003774383.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 301 bits (771), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 145/248 (58%), Positives = 195/248 (78%), Gaps = 2/248 (0%) Query: 78 KKGV-PTEAGQLLIDYYREQGAHQADLLSKLQGLRGLKRGHVSIVIGEGFVSDFMSRPMA 136 K+GV PTEAG LL++YYREQ +HQ+D+L+KLQ +RGLKRG ++I++GEGF+SD +S P+ Sbjct: 56 KRGVSPTEAGALLLEYYREQRSHQSDVLAKLQEIRGLKRGSINIIMGEGFISDMVSGPIK 115 Query: 137 YFCERHPQISVSLDLAGTNDVLRMVAEDIAEIGLVYNPPTDPKIVSRSVQRQPMMAVVSA 196 FC+++P+I++ LDLAGTN+V+ VA D AEIGLV+NPP + KIVSR+V RQPM A+V Sbjct: 116 QFCKKYPEIALVLDLAGTNEVVSAVAADEAEIGLVFNPPVEAKIVSRAVARQPMYAIVGR 175 Query: 197 NSPLRNS-KSCTLQELSEYPVGLMHTSYGTRQLLALAEYAAKIKLNPTLTTNSINVLKHF 255 PL +S TL+EL+ YP+ L H +YGTRQL+ A K +L PT+TTNSI +LKHF Sbjct: 176 QFPLLGKVESVTLRELAGYPMALTHLAYGTRQLVEAATLIEKTRLTPTITTNSIAILKHF 235 Query: 256 VRSDLGVTLLPRFAVSTELAAGELFAIPLEDDVLAVAEVHLVTRVGRKLSVAANRFVSYS 315 V+S+LG TLLP FAV+TELAA EL+AIP+ + +LA +E HL+TR GR+LS AANR + + Sbjct: 236 VKSELGFTLLPLFAVTTELAARELYAIPVRNALLARSEAHLITRTGRQLSTAANRLLQHL 295 Query: 316 SSLMQAFQ 323 S+ M+AFQ Sbjct: 296 STRMKAFQ 303 >gi|300313657|ref|YP_003777749.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 108/232 (46%) Query: 82 PTEAGQLLIDYYREQGAHQADLLSKLQGLRGLKRGHVSIVIGEGFVSDFMSRPMAYFCER 141 P AG+LL + + ++L L+GL+RG V + EGF +F+ + FC + Sbjct: 92 PNAAGELLAAHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQ 151 Query: 142 HPQISVSLDLAGTNDVLRMVAEDIAEIGLVYNPPTDPKIVSRSVQRQPMMAVVSANSPLR 201 H I L + V + + E ++GL + D I QR P++AV+ L Sbjct: 152 HKGIRFQLSVGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELA 211 Query: 202 NSKSCTLQELSEYPVGLMHTSYGTRQLLALAEYAAKIKLNPTLTTNSINVLKHFVRSDLG 261 + K +L EL+ YP+ + + R+L+ + L PTL +SI+ L FV + G Sbjct: 212 HRKQVSLSELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQG 271 Query: 262 VTLLPRFAVSTELAAGELFAIPLEDDVLAVAEVHLVTRVGRKLSVAANRFVS 313 + + + G+L A+P+ D + ++ + + GR L AA F++ Sbjct: 272 IGFSAALPIRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLN 323 >gi|300312482|ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 91.3 bits (225), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 4/231 (1%) Query: 86 GQLLIDYYREQGAHQADLLSKLQGLRGLKRGHVSIVIGEGFVSDFMSRPMAYFCERHPQI 145 G++L + R+ +++ LQ L+GL+ G V + EGF DF+ R + F +++P Sbjct: 66 GEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGF 125 Query: 146 SVSLDLAGTNDVLRMVAEDIAEIGLVYNPPTDPKIVSRSVQRQ--PMMAVVSANSPLRNS 203 L + V R V E A+IGL + +P+I + V RQ P+ ++ + PL Sbjct: 126 VFQLFVGAPALVSRQVREGNADIGLTFARLPEPEI--KVVHRQPGPIALIMRKDHPLARF 183 Query: 204 KSCTLQELSEYPVGLMHTSYGTRQLLALAEYAAKIKLNPTLTTNSINVLKHFVRSDLGVT 263 + ++ +L YP+ L + RQL +A ++ + P +T+N I L ++V + ++ Sbjct: 184 RQISVGQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDALS 243 Query: 264 LLPRFAVSTELAAGELFAIPLEDDVLAVAEVHLVTRVGRKLSVAANRFVSY 314 + V +A GEL P+ D V + T GR L + F+ Y Sbjct: 244 ITGEVTVRYRIATGELTMRPIRDCPADGRFVEVQTLAGRTLPRSVEIFLDY 294 >gi|300310543|ref|YP_003774635.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 42/50 (84%), Positives = 45/50 (90%) Query: 29 PLSGEVFGALINLSGRRRFTSQRLVLYAVLASQGHDGAVKTARDALALXK 78 PLSGEVFGALINLSGRRRFTSQRLVLYAVLA+QG GA TAR+ALAL + Sbjct: 22 PLSGEVFGALINLSGRRRFTSQRLVLYAVLAAQGQAGACSTAREALALFR 71 >gi|300313689|ref|YP_003777781.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 1/235 (0%) Query: 81 VPTEAGQLLIDYYREQGAHQADLLSKLQGLRGLKRGHVSIVIGEGFVSDFMSRPMAYFCE 140 V T AG++L+ Y R +L++++GL + +G +++ EGF D + A F E Sbjct: 56 VLTPAGEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFRE 115 Query: 141 RHPQISVSLDLAGTNDVLRMVAEDIAEIGLVYNPPTDPKIVSRSVQRQPMMAVVSANSPL 200 ++P + L + G +MV + A+I + Y+ + + P+ A++ + PL Sbjct: 116 QYPGLQFKLHVVGAARASQMVIDGEADISVTYSLAPAEGLAVAYRESGPVFALMKRDHPL 175 Query: 201 RNSKSCTLQELSEYPVGLMHTSYGTRQLLALAEYAAKIKLNPTLTTNSINVLKHFVRSDL 260 + L +LS YP+ L RQL +A + +P T++S+ + F Sbjct: 176 ASRTLLALSDLSPYPLALPEVGTTVRQLFDIACSMRGLLFSPVFTSHSLGAVYRFTTRSP 235 Query: 261 GVTLLPRFAVSTELAAGE-LFAIPLEDDVLAVAEVHLVTRVGRKLSVAANRFVSY 314 L F E A + + + + + L V + T GRKL A F + Sbjct: 236 DTVALGGFLTVHERAEEDGMILVAMAESELHQRTVQVQTMAGRKLPPAVAAFSDF 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 957,833 Number of extensions: 39209 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 7 Length of query: 326 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 241 Effective length of database: 1,217,395 Effective search space: 293392195 Effective search space used: 293392195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)