BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0016.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A...    89   1e-19
gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A...    56   1e-09

>gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 89.4 bits (220), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/45 (91%), Positives = 43/45 (95%)

Query: 59  FTRNKLDADLRKIWSEQDLTVVFVTHSIYEAVYLSSRVVVMAARP 103
           FTRNKLDADLR IWS QDLTVVFVTHSIYEAV+LSSRV+VMAARP
Sbjct: 184 FTRNKLDADLRDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARP 228



 Score = 70.9 bits (172), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 38/44 (86%)

Query: 21 VLSAQRVEKTYRNGTRALDEVKLEIRRGEFVSLLGPSXFTRNKL 64
          VLSAQRVEKTYRNGT ALDEV+L+I RGEFVSLLGPS   ++ L
Sbjct: 19 VLSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTL 62


>gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query: 59  FTRNKLDADLRKIWSEQDLTVVFVTHSIYEAVYLSSRVVVMAARPRCYER 108
            TR  L  +L +IW E   T+VFVTHSI EA+YL+ R+VVM  RP   +R
Sbjct: 174 LTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKR 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 359,952
Number of extensions: 10753
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 3
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)