BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0011.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309800|ref|YP_003773892.1| isopenicillin N synthase [Herba...   276   1e-75

>gi|300309800|ref|YP_003773892.1| isopenicillin N synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  276 bits (706), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 158/204 (77%), Gaps = 17/204 (8%)

Query: 11  MIPYTPPKTVQRLPVIDFADAFSSDLGKREAVAWEIHKIARDVGFFYLVNHGVPSALVDG 70
           MIPYTPP T +R+PVIDFADAFS +L +REA+AWEIHKI+RDVGFFYLVNHGVP AL+DG
Sbjct: 1   MIPYTPPMTARRIPVIDFADAFSPELARREALAWEIHKISRDVGFFYLVNHGVPQALIDG 60

Query: 71  QFDWARRFFFFCRTGCRRARFFFFFAAPDAVKRAVDMSLSPAGFGYERIGTQALDDG-PT 129
           QFDWARRFF                A P A K A+DM  S +G+GYER+G QALD+G P 
Sbjct: 61  QFDWARRFF----------------ALPQASKSAIDMRHSASGYGYERMGAQALDEGSPA 104

Query: 130 DLKEGFQFGTDLPPDHPYVRQGVLRYGHNLWPQELPGMRAHAQQYHAAMSVLSQRLLSII 189
           DLKEGFQFG D+ PDHPYV +G+LRYGHNLWPQ+LPG   H++QY+ A+  LS RLL +I
Sbjct: 105 DLKEGFQFGFDIAPDHPYVLRGLLRYGHNLWPQDLPGFETHSRQYYEAVRALSHRLLGVI 164

Query: 190 ALSLQLPEDFFDFALGTPIATQRM 213
           ALSL++PEDFF   L TPIATQRM
Sbjct: 165 ALSLEMPEDFFTPVLHTPIATQRM 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 695,134
Number of extensions: 27795
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)