BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0010.p
         (336 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309799|ref|YP_003773891.1| nitrate/sulfonate/bicarbonate A...   566   e-163

>gi|300309799|ref|YP_003773891.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  566 bits (1460), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 271/307 (88%), Positives = 288/307 (93%)

Query: 30  TAQAQAQEKVTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQ 89
           T  AQAQ+KVTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQ
Sbjct: 23  TGLAQAQDKVTLLSNWYAQAEHGGFYQAVAKGIYKKYGMDVTIKMGGPQVNNMQILVAGQ 82

Query: 90  ADFSMGYDFAVLKGVEQGLPLVTVGTSFQSDLQGMMTHADVPNLGALKDKTILVAGSGQS 149
           ADFSMGYDF V+KGVEQGLPLVTVGTSFQSDLQGMMTH DV +LG LK+KTILVAGSGQS
Sbjct: 83  ADFSMGYDFTVMKGVEQGLPLVTVGTSFQSDLQGMMTHDDVASLGGLKNKTILVAGSGQS 142

Query: 150 SWWPWLKAKYGYTDAQSKAYTFNLQPFFADPNTVQQAYPSSELFQAEKSGAKANFFLFAQ 209
           SWWPWLKAKYGYTDAQS+AYTFNLQPFFADPN  QQAYPSSELFQA+K+G K+ FFLFA 
Sbjct: 143 SWWPWLKAKYGYTDAQSRAYTFNLQPFFADPNIAQQAYPSSELFQADKAGVKSKFFLFAS 202

Query: 210 DGYPPYGTTIVTLQKTVATKPDLVKRFVKATAEGWKSYLEDPAPANALIKQDNKNMGDEQ 269
           +GYPPYGTTIVTLQKTVATKPDLV+RFVKATAEGWKSYLEDPAP NALIK DNKNMGDEQ
Sbjct: 203 EGYPPYGTTIVTLQKTVATKPDLVQRFVKATAEGWKSYLEDPAPGNALIKADNKNMGDEQ 262

Query: 270 LAYAVKKLKELKVVTGGDAAKQGIGIMTDERWKKTYDTMVSTGLLKADVDWHKAYTTQFV 329
           LAYA+ KLKELKVVTGGDAA+ GIG+MTDERWK+TY+ MV+TGLLKA  D+HKAYTTQFV
Sbjct: 263 LAYALGKLKELKVVTGGDAARLGIGVMTDERWKQTYEVMVATGLLKAGTDYHKAYTTQFV 322

Query: 330 KDMHVMP 336
           KDM VMP
Sbjct: 323 KDMKVMP 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,022,644
Number of extensions: 41594
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,212,660
Effective search space: 303165000
Effective search space used: 303165000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)