BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0008.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309798|ref|YP_003773890.1| flavodoxin reductases (ferredox...   132   1e-32
gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanill...    75   3e-15
gi|300310671|ref|YP_003774763.1| flavodoxin reductases (ferredox...    69   2e-13

>gi|300309798|ref|YP_003773890.1| flavodoxin reductases
           (ferredoxin-NADPH reductases) family 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  132 bits (333), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 108/173 (62%), Gaps = 9/173 (5%)

Query: 10  LFAAGIGITPIYAMAADLLSRGRAAQLHYFARSMGHAAFLSPLSQSAMAGHCHFHFGLSA 69
           L AAGIGITP++AMAA+L ++GR  +LHYFARS+ HAAF   L+  +       H GL  
Sbjct: 123 LLAAGIGITPLHAMAAELATQGRRHRLHYFARSLAHAAFFHELAAGSQG--MSLHLGLDG 180

Query: 70  EEAGIAIAAGLAVLPRAAPLYVCGPAPFIAQVREQAMQLGWRDADVHFELF------AST 123
            E   AIAA LA  PR++PLYVCGP+PFI   R  A   GWR+ D+HFE F      A+ 
Sbjct: 181 AETEHAIAAALAAAPRSSPLYVCGPSPFIDAARRHAQLAGWREQDIHFERFAAPAMPAAE 240

Query: 124 APASDPHAAQDRAFELVLRRSGVQCLVQPGQSIAAAAAXAFAAVAGPVCWKAY 176
           A  + P  A D  FELVL+RSG++C V PGQSI AAAA     + G  C + +
Sbjct: 241 ADPARPVQAPDSTFELVLQRSGLRCQVLPGQSIVAAAAQVGVVI-GTSCGEGF 292


>gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanillate
           degradation ferredoxin-like) oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 75.1 bits (183), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 4/147 (2%)

Query: 10  LFAAGIGITPIYAMAADLLSRGRAAQLHYFARSMGHAAFLSPLSQSAMAGHCHFHFGLSA 69
           L A GIG+TPI  MA  L + G + ++HY ARS    AF   ++ S  A     H+    
Sbjct: 110 LLAGGIGVTPILCMAEALAAAGASFEMHYCARSPARQAFRERIAASGFAARVVHHYDDGE 169

Query: 70  EEAGIAIAAGLAVLPRAAPLYVCGPAPFIAQVREQAMQLGWRDADVHFELFASTAPASDP 129
               + + A LA    A  LYVCGPA FIA V + A   GW +A VHFE F +    +D 
Sbjct: 170 AAQKLDLDALLAQADPATHLYVCGPAGFIAHVVDTARARGWPEAQVHFEYFGAAPVKADG 229

Query: 130 HAAQDRAFELVLRRSGVQCLVQPGQSI 156
           +     AFE+ L  SG    + P +++
Sbjct: 230 NG----AFEVKLASSGQVYTIPPERTV 252


>gi|300310671|ref|YP_003774763.1| flavodoxin reductases
           (ferredoxin-NADPH reductases) family 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 10  LFAAGIGITPIYAMAADLLSRGRAAQLHYFARSMGHAAFLSPLSQSAMAGHCHFHFGLSA 69
           LF AGIG+TP+ AMA  L +  +   LHYF R+  HAAF   L  +  A H  FH+ +  
Sbjct: 108 LFGAGIGVTPLLAMAYRLWAEEKRFTLHYFVRAREHAAFADLLENAPFAAHVRFHYAVMP 167

Query: 70  EEAGIAIAAGLAVLPRAAPLYVCGPAPFIAQVREQAMQLGWRDADVHFELF 120
            +    +   L    + A +Y CGPAPF+  V + A      +A +H E F
Sbjct: 168 AQMEHYLTVCLEAGSKEAHVYTCGPAPFMDAVVKCASATRSEEA-IHLEHF 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 517,214
Number of extensions: 17660
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 3
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)