BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0147.0007.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309798|ref|YP_003773890.1| flavodoxin reductases (ferredox...    79   9e-17
gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanill...    73   3e-15
gi|300310671|ref|YP_003774763.1| flavodoxin reductases (ferredox...    55   1e-09

>gi|300309798|ref|YP_003773890.1| flavodoxin reductases
          (ferredoxin-NADPH reductases) family 1 protein
          [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score = 78.6 bits (192), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%)

Query: 18 LRLRVAAVREDGHGIRVFDLCADDGRRLPAWTPGAHIKLSLPGGLERCYSLCNTPEETGF 77
          L LRV AVR+    IR+ +L + DG  LP WTPGAH++L L  GL R YSLCNTP++   
Sbjct: 16 LMLRVRAVRQAAQDIRLLELVSQDGAALPPWTPGAHLRLQLQDGLVRAYSLCNTPQQRDC 75

Query: 78 YRIAVKR 84
          Y IAVKR
Sbjct: 76 YLIAVKR 82


>gi|300313278|ref|YP_003777370.1| vanillate O-demethylase
          (vanillate degradation ferredoxin-like) oxidoreductase
          [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 73.2 bits (178), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%)

Query: 18 LRLRVAAVREDGHGIRVFDLCADDGRRLPAWTPGAHIKLSLPGGLERCYSLCNTPEETGF 77
          L+++VAA RE+ H I   +L A DG  LPA+T GAHI + LPGGL R YSLCN P E   
Sbjct: 4  LQVKVAARREEAHDIIALELVAVDGAALPAFTAGAHIDVHLPGGLVRQYSLCNAPHEQHR 63

Query: 78 YRIAVKR 84
          Y+I V R
Sbjct: 64 YQIGVLR 70


>gi|300310671|ref|YP_003774763.1| flavodoxin reductases
          (ferredoxin-NADPH reductases) family 1 protein
          [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 55.1 bits (131), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%)

Query: 18 LRLRVAAVREDGHGIRVFDLCADDGRRLPAWTPGAHIKLSLPGGLERCYSLCNTPEETGF 77
          ++L V  + ++   IR F L   DG  LPA+ PGAHI ++ P G+ R YSLC   E+   
Sbjct: 1  MKLIVDTLTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCG 60

Query: 78 YRIAVKR 84
          Y IAVKR
Sbjct: 61 YTIAVKR 67


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 316,674
Number of extensions: 11712
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 3
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)