BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0004.p (180 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 160 7e-41 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 129 2e-31 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 117 6e-28 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 114 6e-27 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 110 5e-26 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 160 bits (404), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 94/141 (66%), Positives = 106/141 (75%), Gaps = 17/141 (12%) Query: 20 AXQIADGDLAVHIDTKPGDKDSLLMAMKGMRDKLAAIVTEVRVGSETISTASTEIARGNL 79 A QIA+GDLAV IDT+ GD DSL+ AM+ MRDKLAAIV EVR GSETI+TAS+EIARGNL Sbjct: 233 AGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNL 292 Query: 80 D---RPAARARA-------------RARQRAXKNAQQANQLAVAASDVAVQGGSIVSQVV 123 D R +A A +Q A +NA QAN LA+AASDVAVQGGSIVSQVV Sbjct: 293 DLSGRTEQQAGALEETASSMEQLNSTVKQNA-ENAHQANDLALAASDVAVQGGSIVSQVV 351 Query: 124 QTMESINASSQKVVDIISVID 144 QTM+SINASSQKV DI+SVID Sbjct: 352 QTMQSINASSQKVADIVSVID 372 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/145 (51%), Positives = 93/145 (64%), Gaps = 25/145 (17%) Query: 20 AXQIADGDLAVHIDTKPGDKDSLLMAMKGMRDKLAAIVTEVRVGSETISTASTEIARGNL 79 A QIADGDL ++ TK GD SLL A+K MRD L +IV +VR G+ TI AS+EIA GNL Sbjct: 225 AQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNL 284 Query: 80 DRPAARARARARQRAXK--------------------NAQQANQLAVAASDVAVQGGSIV 119 D +R Q+A NA+QA+QLAV+AS+VA QGG +V Sbjct: 285 DLS-----SRTEQQASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVV 339 Query: 120 SQVVQTMESINASSQKVVDIISVID 144 +QVV TM+ INASS+K+VDIISVID Sbjct: 340 AQVVTTMDGINASSRKIVDIISVID 364 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 117 bits (292), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 17/141 (12%) Query: 20 AXQIADGDLAVHIDTKPGDKDSLLMAMKGMRDKLAAIVTEVRVGSETISTASTEIARGNL 79 A +IA GDL +I+T PGD SLL A++ MRD L + +T ++ + TI++AS EIA GNL Sbjct: 227 ANRIAQGDLTPNIETAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNL 286 Query: 80 DRPA----------------ARARARARQRAXKNAQQANQLAVAASDVAVQGGSIVSQVV 123 D A +Q A NA+QANQLA +AS+VA+QGGS+VSQVV Sbjct: 287 DLSGRTEQQAGSIEETASAMEELTATVKQNA-DNARQANQLAESASEVAIQGGSVVSQVV 345 Query: 124 QTMESINASSQKVVDIISVID 144 QTME I SS+K+ DII VID Sbjct: 346 QTMEGITDSSRKIADIIGVID 366 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 114 bits (284), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 97/152 (63%), Gaps = 24/152 (15%) Query: 20 AXQIADGDLAVHIDTKPGDKDS---LLMAMKGMRDKLAAIVTEVRVGSETISTASTEIAR 76 A ++A GDL I+ P KD LL+A+K M D L IV +VR+G++TI+TASTEIA Sbjct: 226 AQRVAGGDLTTRIE--PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIAS 283 Query: 77 GNLDRPAARARARA-----------------RQRAXKNAQQANQLAVAASDVAVQGGSIV 119 GNLD ++R +A +Q A NA+QANQLAV+AS+VA QGG++V Sbjct: 284 GNLDL-SSRTEEQASSLEETASAMEELTSTVKQNA-DNARQANQLAVSASEVASQGGAVV 341 Query: 120 SQVVQTMESINASSQKVVDIISVIDLVGDYQN 151 +QVV TM SINASS+K+ DII VID + N Sbjct: 342 NQVVDTMGSINASSRKIADIIGVIDGIAFQTN 373 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 110 bits (276), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 67/137 (48%), Positives = 89/137 (64%), Gaps = 15/137 (10%) Query: 23 IADGDLAVHIDTKPGDKDSLLMAMKGMRDKLAAIVTEVRVGSETISTASTEIARGN---- 78 IA G+L+ +DT PGD+ SLL ++ MRDKLA++V +VRVG+ I+ AS+EIA GN Sbjct: 230 IAHGELSAPVDTAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLS 289 Query: 79 ---------LDRPAARA--RARARQRAXKNAQQANQLAVAASDVAVQGGSIVSQVVQTME 127 L++ A +A +R NAQQA LA +ASDVA Q G++V QVV TM Sbjct: 290 ERTEQQADTLEKTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMG 349 Query: 128 SINASSQKVVDIISVID 144 I+ASS+K+VDII VID Sbjct: 350 QIDASSRKIVDIIGVID 366 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.125 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 263,339 Number of extensions: 6097 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 61 Length of query: 180 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 101 Effective length of database: 1,245,805 Effective search space: 125826305 Effective search space used: 125826305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)