BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0146.0004.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 164 9e-42 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 151 7e-38 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 111 8e-26 gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t... 94 1e-20 gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 63 3e-11 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 164 bits (415), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 146/283 (51%), Gaps = 4/283 (1%) Query: 14 PVPASSQETHEIKVVIGFLAPLSGSNQARGASMINGAQLAIDELNKKAIKVNNTRAVFEL 73 P+P QET + IGF PLSG + G SM NG QLA+ E N++ +++ L Sbjct: 30 PLP-DRQETATL--AIGFAGPLSGPSGGVGKSMQNGVQLALAEANRRGLRIGGKSWQLRL 86 Query: 74 IPQDDRFDANAGKLATDYLLKRNLTALVCH-SSTVCIATAAQVQAARIPYISVGATNHKF 132 I QDDR D + L+++ + A+V H +S +A A A + ++ A + + Sbjct: 87 IAQDDRADPATAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRL 146 Query: 133 TQLGYDNTFRMFGHSEQGGILFGHYVYDDLKVDRMAVIDDKTPSGTAMADQFSEGFRKAG 192 T + Y FR ++E G L Y D L+ + IDD+TP G +A+QF+ + G Sbjct: 147 TAMSYPRIFRTIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERG 206 Query: 193 GLLLGRYSVSDKTSDFNQVLADIKESRADAIFWGGTHLQAANMIVNAKRLGVNTRFLNAM 252 ++GRYSVSDKTSDFN L + ++ + D IF+GG QA + + +RL ++ R + + Sbjct: 207 AQVVGRYSVSDKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASP 266 Query: 253 NGMNNRNFLNQVNGAGNIFTLESDQQRDKLPGWKNFEKNXTRN 295 + + A LE +DK+PGWK+F + + N Sbjct: 267 GTLGLPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYSEN 309 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 151 bits (381), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 135/251 (53%), Gaps = 6/251 (2%) Query: 1 VFLLLSWVGLSGFPVPASSQETHEIKVVIGFLAPLSGSNQARGASMINGAQLAIDELNKK 60 + L + +GL+ F A SQE V I + PLSG N G NGA++A+DELN K Sbjct: 7 IIPLTAAIGLA-FAGAAYSQEV----VKIAHVGPLSGPNAHMGKDNENGARMAVDELNAK 61 Query: 61 AIKVNNTRAVFELIPQDDRFDANAGKLATDYLLKRNLTALVCHSSTVCIATAAQVQA-AR 119 + + FEL+ +DD D L+ + + A++ H ++ A+++ + A Sbjct: 62 GFTIGGKKVKFELVGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDAG 121 Query: 120 IPYISVGATNHKFTQLGYDNTFRMFGHSEQGGILFGHYVYDDLKVDRMAVIDDKTPSGTA 179 IP +S ATN K+TQ G+ FR+ + Q G G Y L ++AVIDD+T G Sbjct: 122 IPQVSPSATNPKYTQQGFKTAFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQG 181 Query: 180 MADQFSEGFRKAGGLLLGRYSVSDKTSDFNQVLADIKESRADAIFWGGTHLQAANMIVNA 239 +AD+F++G + AGG ++G +DK +DFN +L +K + D +F+GG M+ Sbjct: 182 VADEFAKGAKAAGGTIVGTQYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQM 241 Query: 240 KRLGVNTRFLN 250 K+LG++ +F+ Sbjct: 242 KQLGISAKFMG 252 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 111 bits (277), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 4/241 (1%) Query: 10 LSGFPVPASSQETHEIKVVIGFLAPLSGSNQARGASMINGAQLAIDELNKKAIKVNNTRA 69 L+ P A +QET +K IGF +PL+G + G G +AI+ LN + I V + Sbjct: 15 LALIPAFAMAQETQVVK--IGFSSPLTGPQASAGKDNQGGLMMAIERLNAQPITVGGKKI 72 Query: 70 VFELIPQDDRFDANAGKLATDYLLKRNLTALV-CHSSTVCIATAAQVQAARIPYISVGAT 128 F++I +DD+ D +G L + + A+V ++S V I + A I +V A+ Sbjct: 73 KFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGIVVATV-AS 131 Query: 129 NHKFTQLGYDNTFRMFGHSEQGGILFGHYVYDDLKVDRMAVIDDKTPSGTAMADQFSEGF 188 N K TQ G+ FR+ Q G Y +LK R+AVIDD+T G +A +F + Sbjct: 132 NPKITQQGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYGQGLAQEFIKVA 191 Query: 189 RKAGGLLLGRYSVSDKTSDFNQVLADIKESRADAIFWGGTHLQAANMIVNAKRLGVNTRF 248 + G ++ +DK +DF +L IK + DA+F GG Q + K+LGV+ Sbjct: 192 KANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGVDVPL 251 Query: 249 L 249 + Sbjct: 252 M 252 >gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%) Query: 27 VVIGFLAPLSGSNQARGASMINGAQLAIDELNKKAIKVNNTRAVFELIPQDDRFDANAGK 86 + +GF LS + S + GAQLAIDE N A K + FEL+PQDD + N Sbjct: 31 IALGFTGRLS---EPIAQSALQGAQLAIDEANALAAK-RRSPLRFELLPQDDHGNENFAV 86 Query: 87 LATDYLLKRNLTALV-CHSSTVCIATAAQVQAARIPYISVGATNHKFTQLGYDNTFRMFG 145 Y +K + ++ SS +ATAA ++A+IP I AT+ ++T +G FR+ G Sbjct: 87 NIARYYVKEKVAGVIGPWSSDAALATAAIYESAQIPQIGFTATSSQWTGMGNRMPFRVVG 146 Query: 146 HSEQGGILFGHYVYDDLKVDRMAVIDDKTPSGTAMADQFSEGF-RKAGGLLLGRYSVSDK 204 + + L+ R+ VI A+AD E A + L RY V + Sbjct: 147 GTRELAATLAEVATRSLQGRRIFVIQSDAAYSRALADTLVENLGGSAQQIALARYQVGRR 206 Query: 205 TSDFNQVLADIKESRADAIFWGGTHLQAANMIVNAKRLGVNTRFLNAMNGMNNRNFLNQV 264 ++DF+ L + +AD I + G + QA I A R R L G +N + + Sbjct: 207 STDFHAALKAAEAHQADVIVFVGLYPQARAFIDGANRTRTTARLL-LTGGASNLSLPAPL 265 Query: 265 NGAGNIFTLESDQQRDKLPGWKNFEKNXTRN 295 + LE + R P WK + R Sbjct: 266 E--LRLHVLEYEIARPHCPQWKVVTQTYQRR 294 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 8/258 (3%) Query: 23 HEIKVVIGFLAPLSGSNQARGASMINGAQLAIDELNKKAIKVNNTRAVFELIPQDDRFDA 82 H V I P++G+ G + GA AI+++N A N + FE + DD + Sbjct: 25 HAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINA-AGGANGNK--FEAVMMDDACEP 81 Query: 83 NAGKLATDYLLKRNLTALVCHSSTVCIATAAQV-QAARIPYISVGATNHKFTQL-GYDNT 140 + ++ + + ++ H + A+ + + + I+ AT + T+ + Sbjct: 82 KQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFI 141 Query: 141 FRMFGHSEQGGILFGHYVYDDLKVDRMAVIDDKTPSGTAMADQFSEGFRKAGGLLLGRYS 200 FR G +Q G YV + LK ++AV+ DK G +A A ++ Sbjct: 142 FRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEG 201 Query: 201 VSDKTSDFNQVLADIKESRADAIFWGGTHLQAANMIVNAKRLGVNTRFLNAMNGMNNRNF 260 ++ SD++ ++ +K D +++GG H + ++ A+ G+ F+ G+ N++ Sbjct: 202 INAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAVFMGP-EGVGNKDI 260 Query: 261 LNQVNGA--GNIFTLESD 276 A G + TL +D Sbjct: 261 TAIAGPASEGMLVTLPAD 278 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 881,053 Number of extensions: 34828 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 5 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)