BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0144.0014.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310968|ref|YP_003775060.1| phasin family protein protein [...   218   3e-58
gi|300314036|ref|YP_003778128.1| hypothetical protein Hsero_4759...   160   4e-41

>gi|300310968|ref|YP_003775060.1| phasin family protein protein
           [Herbaspirillum seropedicae SmR1]
          Length = 187

 Score =  218 bits (554), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/150 (74%), Positives = 132/150 (88%)

Query: 1   MTTLTEQFSAATKANFEAQIALFSQFANKTFEGVEKLVDLNLKATKSSLEETREATQKLL 60
           MTT TEQFSAA KAN EAQIALFSQ A+KTFEGVEKLVDLNLKA +S+LEE++ A QKL 
Sbjct: 1   MTTYTEQFSAAAKANAEAQIALFSQLASKTFEGVEKLVDLNLKAARSTLEESQAAAQKLF 60

Query: 61  TAKDVQEFFSLSSAQAQPTVEKSLAYGRHLAGIVSTTQAELTKTAEAQLAEVNRKVISLI 120
            AKD QEFF+L+SA AQPT+EKS+AYGRHL+GI S+TQAELTK AEAQ+AEVNRKV+++I
Sbjct: 61  AAKDPQEFFALTSAHAQPTLEKSVAYGRHLSGIFSSTQAELTKAAEAQIAEVNRKVVAMI 120

Query: 121 DEASKNAPAGSENAISFVKTTIGNFNAGYE 150
           DE +KNAPAGSE A+S +K+ IGN +AGYE
Sbjct: 121 DEVAKNAPAGSEQAVSVLKSAIGNMSAGYE 150


>gi|300314036|ref|YP_003778128.1| hypothetical protein Hsero_4759
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  160 bits (405), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 113/150 (75%)

Query: 1   MTTLTEQFSAATKANFEAQIALFSQFANKTFEGVEKLVDLNLKATKSSLEETREATQKLL 60
           M +  +QFSAATKAN +A + L +    K FEGVEK+V+LNL ATK++LEE   A ++L 
Sbjct: 1   MFSYQDQFSAATKANLQAHLDLINSLTAKAFEGVEKIVELNLSATKATLEEAAAAAKQLA 60

Query: 61  TAKDVQEFFSLSSAQAQPTVEKSLAYGRHLAGIVSTTQAELTKTAEAQLAEVNRKVISLI 120
            AKD QE  SL++AQAQP  EK+ AYGRHLAGIVS+TQAE TK AEAQ+AE +RK+ +LI
Sbjct: 61  GAKDPQELLSLATAQAQPGAEKATAYGRHLAGIVSSTQAEFTKAAEAQIAETSRKLSALI 120

Query: 121 DEASKNAPAGSENAISFVKTTIGNFNAGYE 150
           DE +KNAP GSE A+S +K T+ N NA YE
Sbjct: 121 DEITKNAPPGSEQAVSILKATLTNANAAYE 150


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.121    0.307 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 361,790
Number of extensions: 10757
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)