BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0144.0003.p
         (350 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310963|ref|YP_003775055.1| signal peptide protein [Herbasp...   538   e-154

>gi|300310963|ref|YP_003775055.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  538 bits (1387), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 255/328 (77%), Positives = 289/328 (88%), Gaps = 1/328 (0%)

Query: 23  MLHSFARFSRLSLLALCALSAVIAVPASANVVVVLNSGDATVTLLDQSTYKEINTFSVGK 82
           ML    ++  L+L A C +SAV+AV A ANVVVVLNSGDA+V+LLD++  KE++TFSVGK
Sbjct: 1   MLRRIRQYFSLTLRAAC-VSAVLAVSAHANVVVVLNSGDASVSLLDETGEKELSTFSVGK 59

Query: 83  EPHHLMATPDNKSLIVASATGNQLIFLDPKTGEVQRQLRGIIDPYQIGFSPDQKWFIANG 142
           EPHHLMATPDNKSLIVASATGNQL+FLDPKTG VQR++R IIDPYQIGF+PDQKWF+A G
Sbjct: 60  EPHHLMATPDNKSLIVASATGNQLLFLDPKTGAVQRKIRDIIDPYQIGFTPDQKWFVATG 119

Query: 143 LRLDRVDVYRYDGHNLDLAKRVRLAKTPSHIAFDAASTTAFITQQGSNEISAIDLATQQV 202
           LRLDRVDVY YDG +L L+KR+ L KTPSHIAFD ASTTAFITQQGS++ISAIDLATQQV
Sbjct: 120 LRLDRVDVYSYDGQDLKLSKRIPLPKTPSHIAFDNASTTAFITQQGSDQISAIDLATQQV 179

Query: 203 KWTMPVGKLPAGIFMTPDNKYLLVGIMGKDYVQVIDWRTQKTVKTIRTGEGAHNFRAHGD 262
           KWTMPVGKLPAGI MTPDNKYL+VGIMG DYV+VIDWRTQK VK I+TG GAHNFR  GD
Sbjct: 180 KWTMPVGKLPAGIIMTPDNKYLMVGIMGADYVEVIDWRTQKIVKKIKTGVGAHNFRGQGD 239

Query: 263 KRYVYVSNRVSNTINIIDLQTLESVGVISVPGGPDCMEVTEDGKTMWVTLRWVKKVAVID 322
           KR+VYVSNRV+NTI+++D+ TLE+VG I VPGGPDCMEVT DGKTMW TLRWVKKVAVID
Sbjct: 240 KRFVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTSDGKTMWATLRWVKKVAVID 299

Query: 323 LASKKIMKIIPVGRSPHGIYFINRAADL 350
           LAS+ + K+IPVGRSPHGIY  NRA DL
Sbjct: 300 LASRSVTKVIPVGRSPHGIYLHNRAPDL 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,037,022
Number of extensions: 40137
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,212,660
Effective search space: 320142240
Effective search space used: 320142240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)