BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0143.0018.p (104 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312760|ref|YP_003776852.1| transcription regulator protein... 194 1e-51 gi|300313708|ref|YP_003777800.1| AsnC family transcription regul... 75 8e-16 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 70 5e-14 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 67 3e-13 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 64 2e-12 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 194 bits (492), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 91/101 (90%), Positives = 97/101 (96%) Query: 2 LRTAENXCLRRIRELREAGIINAEVAMVDPFALGYGMLAFLEISLNNQSDEHMQEFEQRM 61 L ++ CLRRIR+LREAGII+AEVAMVDPFALGYGMLAFLEISLNNQSD+HMQ+FEQRM Sbjct: 34 LHISQPTCLRRIRDLREAGIISAEVAMVDPFALGYGMLAFLEISLNNQSDQHMQDFEQRM 93 Query: 62 AKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFVRRVISGS 102 AKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFVRRVISGS Sbjct: 94 AKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFVRRVISGS 134 >gi|300313708|ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 75.5 bits (184), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%) Query: 9 CLRRIRELREAGIINAEVAMVDPFALGYGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVM 68 CLRR++ L E G+I +VA++D + + A +EI+L+ Q +E Q FE +A E V Sbjct: 38 CLRRVKRLVEGGVIARQVALLDAQKVAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQ 97 Query: 69 QCYFVSGEYDYFLAVHVIDMDAYYQFVRRVISGSR 103 QCY VS D+ L V V DM +Y+ R+ + R Sbjct: 98 QCYRVSPGPDFVLVVLVRDMSSYHALAHRLFASQR 132 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 69.7 bits (169), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 55/89 (61%) Query: 9 CLRRIRELREAGIINAEVAMVDPFALGYGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVM 68 CL R+R+L+EAG I A ++P L +L F+E+ L+ + + EF++ + E+M Sbjct: 37 CLERVRKLQEAGYILGYAAQLNPELLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIM 96 Query: 69 QCYFVSGEYDYFLAVHVIDMDAYYQFVRR 97 +C+ V+G +DY + V DM+AY +F+ + Sbjct: 97 ECHMVAGGFDYLVKSRVKDMNAYREFLGK 125 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 67.0 bits (162), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 52/87 (59%) Query: 9 CLRRIRELREAGIINAEVAMVDPFALGYGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVM 68 C+ R+R + G+I A V+P +LG +L F+EI+LN++S ++F + + + EV Sbjct: 44 CIERVRRMERDGVITGYYARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQ 103 Query: 69 QCYFVSGEYDYFLAVHVIDMDAYYQFV 95 +C+ VSG++DY + + M Y + + Sbjct: 104 ECHLVSGDFDYLIKARIRGMAEYRKLL 130 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 63.9 bits (154), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 51/85 (60%) Query: 11 RRIRELREAGIINAEVAMVDPFALGYGMLAFLEISLNNQSDEHMQEFEQRMAKEAEVMQC 70 RR++ L EA +I A++DP +G G+ AF ++L+ Q + + FE+ + EV +C Sbjct: 41 RRVQRLEEAHVIERYTAVLDPAVVGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTEC 100 Query: 71 YFVSGEYDYFLAVHVIDMDAYYQFV 95 + V+GE DY L + D+ A+ +F+ Sbjct: 101 FSVTGEGDYILRIVAPDLAAFSEFM 125 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 277,600 Number of extensions: 8930 Number of successful extensions: 45 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 7 Length of query: 104 Length of database: 1,619,870 Length adjustment: 71 Effective length of query: 33 Effective length of database: 1,283,685 Effective search space: 42361605 Effective search space used: 42361605 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)